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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2690.6 nTPM
GTEx:2690.6 nTPM
FANTOM5:167.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004107
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2690.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2690.6
Samples: 156

Max nTPM: 8423.1
Min nTPM: 1545.8
Std nTPM: 768.5
Median nTPM: 2583.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 8423.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 5143.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4965.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 4379.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4168.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 4004.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3985.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3805.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3787.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3776.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3626.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3591.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3560.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3523.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3506.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3480.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3432.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3414.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3413.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3352.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 3339.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 3313.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 3298.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 3239.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3225.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 3221.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 3195.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3177.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 3166.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3163.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3159.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3083.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3060.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3055.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3051.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 3048.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3036.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3008.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3006.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2991.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2954.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2931.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2895.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2884.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2881.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2858.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2853.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2837.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2828.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2815.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2812.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2810.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2797.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2793.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2789.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2771.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2768.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2754.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2740.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2724.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2715.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2711.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2710.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2699.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2676.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2656.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2642.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2632.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2624.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2621.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2619.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2619.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2605.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2599.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2595.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2588.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2587.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2583.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2582.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2581.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2571.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2566.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2563.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2551.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2543.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2538.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2506.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2488.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2476.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2473.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2470.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2465.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2452.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2451.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2447.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2438.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2430.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2426.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2424.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 2417.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2407.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2392.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2378.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2372.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2372.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2366.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2358.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2353.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 2348.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2347.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2343.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2316.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2298.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2297.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2295.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2288.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2268.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2250.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2247.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2233.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2217.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2193.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2175.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2171.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2162.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2160.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2144.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2134.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2100.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2098.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2083.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2063.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2055.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2041.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2028.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2011.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1998.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1994.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1983.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1977.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1972.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1970.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1933.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1888.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1867.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1847.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1827.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1791.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1768.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1710.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1705.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1677.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1644.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1638.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1560.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1545.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 167.0
FF:10204-103F6 68 years, female 167.0

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