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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3016.0 nTPM
HPA Brain:1167.6 nTPM
GTEx:3016.0 nTPM
FANTOM5:136.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1167.6
Sample id Sample description nTPM
Amygdala
nTPM: 1167.6
2695 Female, age 67, right hemisphere 1584.8
2514 Male, age 75, right hemisphere 1211.1
2517 Female, age 94, left hemisphere 1063.2
2814 Male, age 76, right hemisphere 1005.1
1987 Female, age 91, left hemisphere 973.5
Basal amygdala
nTPM: 972.9
2609 Male, age 75, right hemisphere 1273.3
2827 Female, age 67, right hemisphere 1013.2
2685 Female, age 94, left hemisphere 992.2
2243 Female, age 91, right hemisphere 912.0
2110 Male, age 80, left hemisphere 867.3
1955 Male, age 76, both hemispheres 779.1
Central amygdala
nTPM: 1090.3
2826 Female, age 94, left hemisphere 1456.0
2515 Male, age 75, right hemisphere 1299.4
2701 Female, age 91, right hemisphere 965.6
2239 Male, age 80, left hemisphere 882.8
1905 Male, age 76, both hemispheres 847.6
Corticomedial amygdala
nTPM: 957.6
2428 Male, age 75, right hemisphere 1173.9
2429 Female, age 94, left hemisphere 1021.3
2829 Male, age 80, left hemisphere 954.3
2240 Male, age 76, both hemispheres 893.3
2242 Female, age 91, right hemisphere 869.6
2535 Female, age 67, right hemisphere 833.5
Lateral amygdala
nTPM: 1033.2
2516 Male, age 75, right hemisphere 1333.1
2830 Female, age 67, right hemisphere 1268.8
2534 Female, age 94, left hemisphere 1092.2
2256 Male, age 80, left hemisphere 947.0
2255 Female, age 91, right hemisphere 807.6
1883 Male, age 76, both hemispheres 750.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3016.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3016.0
Samples: 152

Max nTPM: 11058.2
Min nTPM: 1488.2
Std nTPM: 1295.3
Median nTPM: 2700.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 11058.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9528.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 7747.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6235.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6186.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5698.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4854.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4852.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 4833.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 4486.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4449.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 4439.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4410.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4315.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4285.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4267.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 4150.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 4125.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4103.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 4076.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4001.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3885.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 3884.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3873.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 3805.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3805.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3795.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 3777.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3761.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3677.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 3658.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3658.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3635.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3611.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3546.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3534.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3467.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3461.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3439.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3435.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3364.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3360.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 3348.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 3305.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3297.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 3234.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3217.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 3196.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3190.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3180.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 3175.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3160.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3112.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3109.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3104.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3070.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3042.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3025.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 3021.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3018.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3011.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3000.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2973.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2935.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2926.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2907.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2888.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2878.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2878.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2877.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2856.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2848.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2847.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2833.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2766.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2726.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2674.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2646.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2635.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2629.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2617.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2615.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2610.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2607.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2603.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2589.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2587.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2581.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2549.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2542.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2541.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2511.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2505.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2492.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2484.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2477.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2470.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2463.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2460.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2442.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2442.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2421.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2419.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2409.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2380.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2365.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2357.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2341.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2324.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2320.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2289.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2262.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2259.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2242.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2229.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2228.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2207.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2203.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2162.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2153.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2146.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2144.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2138.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2108.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2095.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2088.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2069.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2045.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2032.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1980.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1944.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1934.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1916.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1898.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1871.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1859.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1849.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1834.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1833.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1806.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1797.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1787.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1770.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1762.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1755.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1703.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1659.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1643.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1563.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1527.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1510.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1488.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 136.9
FF:10151-102I7 76 years, female 136.9

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