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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:397.3 nTPM
HPA Brain:293.1 nTPM
GTEx:397.3 nTPM
FANTOM5:456.9 Scaled Tags Per Million
Pig:340.0 nTPM
Mouse:588.6 nTPM
Allen mouse:2.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.1
Sample id Sample description nTPM
Amygdala
nTPM: 286.8
2814 Male, age 76, right hemisphere 361.1
1987 Female, age 91, left hemisphere 324.7
2517 Female, age 94, left hemisphere 286.1
2514 Male, age 75, right hemisphere 240.2
2695 Female, age 67, right hemisphere 221.8
Basal amygdala
nTPM: 256.5
2110 Male, age 80, left hemisphere 326.9
2243 Female, age 91, right hemisphere 316.3
1955 Male, age 76, both hemispheres 288.0
2685 Female, age 94, left hemisphere 243.6
2827 Female, age 67, right hemisphere 184.4
2609 Male, age 75, right hemisphere 180.0
Central amygdala
nTPM: 293.1
2239 Male, age 80, left hemisphere 335.1
1905 Male, age 76, both hemispheres 334.4
2826 Female, age 94, left hemisphere 295.2
2515 Male, age 75, right hemisphere 277.2
2701 Female, age 91, right hemisphere 223.7
Corticomedial amygdala
nTPM: 281.8
2242 Female, age 91, right hemisphere 372.1
2535 Female, age 67, right hemisphere 300.7
2829 Male, age 80, left hemisphere 296.2
2429 Female, age 94, left hemisphere 293.9
2240 Male, age 76, both hemispheres 251.7
2428 Male, age 75, right hemisphere 176.3
Lateral amygdala
nTPM: 264.3
2534 Female, age 94, left hemisphere 405.4
1883 Male, age 76, both hemispheres 286.3
2255 Female, age 91, right hemisphere 261.3
2516 Male, age 75, right hemisphere 235.3
2256 Male, age 80, left hemisphere 223.9
2830 Female, age 67, right hemisphere 173.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 397.3
Samples: 152

Max nTPM: 1426.5
Min nTPM: 146.4
Std nTPM: 175.8
Median nTPM: 363.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1426.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1191.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1118.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 926.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 689.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 672.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 666.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 658.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 654.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 621.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 587.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 574.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 571.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 568.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 567.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 564.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 559.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 556.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 554.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 553.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 546.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 539.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 537.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 522.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 511.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 510.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 508.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 498.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 496.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 494.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 492.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 490.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 484.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 483.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 480.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 477.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 475.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 474.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 467.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 455.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 452.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 444.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 440.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 438.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 430.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 429.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 426.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 425.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 425.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 424.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 423.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 421.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 418.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 417.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 416.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 413.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 411.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 410.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 410.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 410.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 408.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 406.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 405.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 403.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 402.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 397.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 396.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 394.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 393.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 385.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 380.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 378.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 376.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 373.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 366.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 364.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 363.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 363.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 361.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 355.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 354.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 353.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 353.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 353.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 352.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 351.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 348.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 344.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 340.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 338.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 336.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 335.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 335.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 331.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 331.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 330.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 327.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 327.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 324.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 323.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 322.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 320.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 318.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 317.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 317.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 312.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 310.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 305.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 304.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 304.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 298.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 296.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 295.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 295.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 293.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 292.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 288.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 286.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 285.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 285.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 282.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 281.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 272.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 270.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 264.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 263.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 262.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 260.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 257.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 250.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 250.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 249.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 246.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 245.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 241.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 230.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 216.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 214.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 213.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 210.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 209.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 195.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 191.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 191.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 188.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 183.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 180.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 179.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 176.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 167.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 156.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 146.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

456.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 456.9
FF:10151-102I7 76 years, female 456.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.0
Pig sample Sample description nTPM
Amygdala
nTPM: 340.0
Samples: 4

Max nTPM: 530.6
Min nTPM: 269.5
Sample A Female 530.6
Sample B Female 269.5
Sample C Male 280.6
Sample D Male 279.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

588.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 588.6
Samples: 4

Max nTPM: 621.4
Min nTPM: 555.2
Sample A Male 621.4
Sample B Male 555.2
Sample C Female 621.0
Sample D Female 556.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
2407 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 2.9
2408 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 0.8

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