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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:447.1 nTPM
HPA Brain:453.2 nTPM
GTEx:447.1 nTPM
FANTOM5:1110.1 Scaled Tags Per Million
Pig:510.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

453.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 374.4
1981 Female, age 72, midline 509.0
2565 Male, age 75, midline 416.1
2194 Female, age 79, both hemispheres 391.1
2816 Male, age 47, midline 353.5
2048 Male, age 55, midline 202.4
Cervical spinal cord, dorsal horn
nTPM: 453.2
2296 Male, age 66, both hemispheres 613.4
2173 Female, age 72, unknown 529.5
2069 Male, age 47, both hemispheres 509.5
2721 Male, age 90, both hemispheres 410.1
2297 Male, age 75, both hemispheres 344.7
1877 Male, age 55, unknown 311.8
Cervical spinal cord, ventral horn
nTPM: 402.3
2480 Male, age 75, both hemispheres 510.2
2098 Female, age 72, unknown 462.2
2809 Male, age 90, both hemispheres 401.9
2068 Male, age 55, unknown 384.9
2295 Male, age 66, both hemispheres 346.8
2820 Female, age 79, both hemispheres 307.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

447.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 447.1
Samples: 159

Max nTPM: 873.5
Min nTPM: 139.6
Std nTPM: 158.1
Median nTPM: 404.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 873.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 866.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 825.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 789.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 776.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 770.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 769.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 754.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 747.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 741.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 737.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 731.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 730.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 717.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 709.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 694.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 689.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 684.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 672.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 660.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 649.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 646.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 628.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 623.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 617.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 614.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 606.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 598.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 595.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 595.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 591.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 584.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 571.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 569.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 567.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 558.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 557.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 551.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 551.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 549.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 543.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 538.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 532.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 530.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 530.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 528.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 528.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 517.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 515.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 503.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 499.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 499.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 492.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 492.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 491.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 487.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 485.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 484.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 483.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 480.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 477.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 474.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 471.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 465.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 461.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 461.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 453.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 446.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 445.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 444.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 442.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 441.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 440.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 439.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 433.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 422.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 422.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 421.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 407.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 404.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 403.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 403.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 402.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 402.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 400.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 399.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 399.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 398.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 396.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 396.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 393.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 389.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 387.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 387.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 387.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 386.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 382.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 377.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 374.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 369.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 368.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 367.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 363.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 362.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 359.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 358.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 358.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 357.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 355.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 349.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 348.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 344.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 343.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 340.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 335.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 331.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 330.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 330.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 324.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 322.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 322.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 321.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 312.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 309.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 309.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 308.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 308.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 307.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 307.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 306.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 300.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 296.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 295.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 292.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 287.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 287.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 285.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 285.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 285.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 283.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 281.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 278.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 274.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 271.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 271.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 267.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 262.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 258.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 256.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 254.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 246.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 242.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 227.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 215.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 213.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 175.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 170.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 165.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 139.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1110.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1110.1
FF:10181-103D1 60 years, female 1888.3
FF:10159-103A6 76 years, female 331.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

510.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 424.1
Samples: 4

Max nTPM: 471.5
Min nTPM: 377.3
Sample A Female 420.6
Sample B Female 377.3
Sample C Male 471.5
Sample D Male 426.8
Ventral spinal cord
nTPM: 510.1
Samples: 4

Max nTPM: 605.6
Min nTPM: 387.7
Sample A Female 472.9
Sample B Female 574.2
Sample C Male 605.6
Sample D Male 387.7

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