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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
235.6
nTPM
FANTOM5:
142.9
Scaled Tags Per Million
Pig:
104.1
nTPM
Allen mouse:
1.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
235.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 173.0
2090
Male, age 80, both hemispheres
185.9
1984
Male, age 76, both hemispheres
173.3
2301
Female, age 85, both hemispheres
171.1
2188
Female, age 91, both hemispheres
161.8
Dorsal cochlear nucleus nTPM: 176.8
2187
Female, age 91, both hemispheres
188.7
2370
Male, age 61, both hemispheres
178.0
2378
Male, age 80, both hemispheres
172.7
2802
Male, age 74, right hemisphere
172.7
2058
Male, age 76, both hemispheres
171.8
Dorsal tegmental nucleus nTPM: 210.8
2358
Male, age 61, both hemispheres
264.3
2083
Male, age 80, both hemispheres
210.7
2326
Male, age 74, both hemispheres
189.5
1936
Male, age 76, left hemisphere
178.7
Dorsolateral tegmental area nTPM: 194.9
2751
Female, age 85, both hemispheres
213.4
2337
Male, age 61, both hemispheres
206.1
2654
Male, age 80, both hemispheres
203.3
2141
Male, age 76, both hemispheres
189.0
2360
Male, age 74, both hemispheres
162.4
Kolliker-Fuse nucleus nTPM: 215.7
2163
Male, age 80, both hemispheres
244.9
2315
Male, age 76, right hemisphere
206.3
2793
Female, age 91, left hemisphere
195.9
Lateral lemniscal nuclei nTPM: 187.7
2169
Male, age 76, both hemispheres
249.9
2746
Female, age 85, left hemisphere
197.4
2036
Male, age 80, both hemispheres
187.2
2453
Male, age 74, right hemisphere
155.9
2320
Female, age 91, left hemisphere
148.0
Lateral parabrachial nucleus nTPM: 200.5
2139
Female, age 85, right hemisphere
261.4
2013
Male, age 80, both hemispheres
195.6
2792
Male, age 76, both hemispheres
179.2
2790
Male, age 61, both hemispheres
165.8
Lateral vestibular nucleus nTPM: 199.5
2184
Male, age 76, both hemispheres
215.5
2311
Male, age 80, both hemispheres
183.4
Locus coeruleus nTPM: 219.0
2123
Female, age 91, both hemispheres
259.1
2720
Male, age 74, both hemispheres
257.0
2014
Male, age 55, unknown
229.7
2788
Male, age 74, unknown
219.8
1980
Male, age 76, both hemispheres
204.3
2162
Male, age 80, both hemispheres
185.3
2317
Female, age 72, unknown
178.0
Medial parabrachial nucleus nTPM: 205.4
2854
Male, age 80, both hemispheres
265.3
2170
Female, age 91, both hemispheres
240.4
2786
Male, age 76, both hemispheres
183.5
2156
Male, age 61, both hemispheres
182.1
2463
Female, age 85, right hemisphere
155.6
Medial periolivary nuclei nTPM: 194.3
2171
Female, age 85, both hemispheres
246.6
2791
Male, age 74, right hemisphere
226.1
2063
Male, age 76, both hemispheres
214.1
2081
Male, age 80, both hemispheres
145.9
2458
Female, age 91, both hemispheres
138.7
Motor facial nucleus nTPM: 189.5
2062
Male, age 76, both hemispheres
235.1
2697
Female, age 85, both hemispheres
218.5
2365
Male, age 74, right hemisphere
215.8
2795
Female, age 91, both hemispheres
160.1
2327
Male, age 80, both hemispheres
157.4
2126
Male, age 61, both hemispheres
150.0
Motor trigeminal nucleus nTPM: 171.1
2335
Male, age 61, both hemispheres
202.1
2309
Male, age 76, both hemispheres
189.8
2560
Male, age 74, both hemispheres
172.6
2079
Male, age 80, both hemispheres
164.5
2321
Female, age 91, both hemispheres
126.7
Nuclei of the trapezoid body nTPM: 200.1
1983
Male, age 76, both hemispheres
244.6
2735
Female, age 85, both hemispheres
232.8
2159
Male, age 61, both hemispheres
209.1
2166
Male, age 80, both hemispheres
189.7
2368
Female, age 91, both hemispheres
124.5
Nucleus raphe magnus nTPM: 220.0
2160
Male, age 61, both hemispheres
284.5
2172
Female, age 85, both hemispheres
269.9
2455
Male, age 74, both hemispheres
238.9
2051
Male, age 76, both hemispheres
218.3
2328
Male, age 80, both hemispheres
179.9
2459
Female, age 91, both hemispheres
128.3
Paramedian reticular nucleus nTPM: 232.0
2050
Female, age 85, both hemispheres
310.5
2052
Male, age 76, both hemispheres
227.2
2057
Male, age 80, both hemispheres
196.2
2313
Male, age 61, both hemispheres
194.2
Pedunculopontine tegmental nucleus nTPM: 235.6
2338
Male, age 61, both hemispheres
273.3
1921
Female, age 85, both hemispheres
227.5
2334
Male, age 80, both hemispheres
206.1
Pontine nuclei nTPM: 215.8
2787
Female, age 85, both hemispheres
294.4
1863
Male, age 55, unknown
279.5
2727
Male, age 61, right hemisphere
229.5
1968
Male, age 76, left hemisphere
216.9
2109
Female, age 72, unknown
196.9
2454
Male, age 74, left hemisphere
183.6
2319
Female, age 91, both hemispheres
170.7
2115
Male, age 80, left hemisphere
154.6
Pontine raphe nucleus nTPM: 209.9
2122
Female, age 85, midline
220.6
2853
Male, age 76, midline
199.2
Posteroventral cochlear nucleus nTPM: 182.6
2752
Female, age 85, both hemispheres
205.8
2070
Male, age 76, both hemispheres
191.7
2341
Male, age 80, both hemispheres
188.3
2371
Male, age 61, both hemispheres
176.1
2135
Female, age 91, both hemispheres
151.1
Principal sensory trigeminal nucleus nTPM: 203.1
2158
Male, age 61, both hemispheres
249.6
2324
Male, age 76, both hemispheres
218.2
2008
Male, age 80, left hemisphere
206.4
2367
Female, age 91, left hemisphere
138.4
Reticular pontine nucleus, caudal nTPM: 172.3
2092
Male, age 76, both hemispheres
222.8
2559
Male, age 74, both hemispheres
177.1
2332
Male, age 80, right hemisphere
157.4
2457
Female, age 91, both hemispheres
132.1
Reticular pontine nucleus, oral nTPM: 183.7
2012
Female, age 85, both hemispheres
248.9
1939
Male, age 80, both hemispheres
221.5
2167
Male, age 76, both hemispheres
214.5
2366
Female, age 91, both hemispheres
150.0
2361
Male, age 74, both hemispheres
83.8
Reticulotegmental nucleus nTPM: 179.3
2325
Male, age 76, both hemispheres
202.2
2452
Male, age 74, both hemispheres
175.5
2333
Male, age 80, both hemispheres
172.0
2322
Female, age 91, both hemispheres
167.6
Spinal trigeminal nucleus, oral nTPM: 198.6
2737
Female, age 85, both hemispheres
221.4
1978
Male, age 76, both hemispheres
190.5
2164
Male, age 80, both hemispheres
183.7
Subcoeruleus area nTPM: 201.5
2323
Female, age 91, left hemisphere
238.4
1958
Male, age 80, both hemispheres
221.1
2369
Female, age 85, left hemisphere
196.0
2451
Male, age 74, both hemispheres
188.5
2089
Male, age 76, left hemisphere
163.6
Superior olive nTPM: 190.1
1875
Female, age 85, both hemispheres
250.1
2020
Male, age 76, both hemispheres
206.3
2364
Male, age 74, right hemisphere
188.1
2329
Male, age 80, right hemisphere
163.5
2561
Female, age 91, both hemispheres
142.2
Ventral periolivary nuclei nTPM: 202.3
2130
Female, age 85, both hemispheres
234.0
2165
Male, age 80, both hemispheres
227.1
2023
Male, age 76, both hemispheres
192.9
2794
Female, age 91, left hemisphere
155.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 193.6
2840
Female, age 85, both hemispheres
273.7
2359
Male, age 61, both hemispheres
213.4
1959
Male, age 76, both hemispheres
203.2
2449
Male, age 74, both hemispheres
182.6
2161
Male, age 80, both hemispheres
166.9
2456
Female, age 91, both hemispheres
121.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.1
Pig sample
Sample description
nTPM
Pons nTPM: 104.1
Samples: 4
Max nTPM: 114.2
Min nTPM: 82.7
Sample A
Female
110.3
Sample B
Female
82.7
Sample C
Male
114.2
Sample D
Male
109.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
