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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:322.7 nTPM
HPA Brain:212.9 nTPM
GTEx:322.7 nTPM
FANTOM5:111.9 Scaled Tags Per Million
Pig:80.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.5
1981 Female, age 72, midline 238.5
2194 Female, age 79, both hemispheres 200.4
2565 Male, age 75, midline 186.7
2048 Male, age 55, midline 185.0
2816 Male, age 47, midline 161.7
Cervical spinal cord, dorsal horn
nTPM: 212.9
2173 Female, age 72, unknown 240.5
2069 Male, age 47, both hemispheres 238.8
2721 Male, age 90, both hemispheres 229.2
2296 Male, age 66, both hemispheres 199.5
1877 Male, age 55, unknown 186.3
2297 Male, age 75, both hemispheres 182.9
Cervical spinal cord, ventral horn
nTPM: 178.5
2098 Female, age 72, unknown 212.5
2068 Male, age 55, unknown 185.1
2480 Male, age 75, both hemispheres 177.7
2809 Male, age 90, both hemispheres 174.1
2820 Female, age 79, both hemispheres 166.1
2295 Male, age 66, both hemispheres 155.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 322.7
Samples: 159

Max nTPM: 694.0
Min nTPM: 151.0
Std nTPM: 85.7
Median nTPM: 310.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 694.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 605.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 593.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 555.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 546.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 511.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 486.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 476.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 457.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 441.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 436.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 436.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 433.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 428.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 427.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 426.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 424.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 423.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 416.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 412.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 411.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 406.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 402.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 399.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 397.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 396.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 394.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 393.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 392.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 391.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 391.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 389.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 388.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 387.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 385.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 377.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 376.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 376.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 373.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 370.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 365.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 364.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 363.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 362.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 360.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 359.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 358.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 356.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 355.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 351.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 351.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 350.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 346.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 346.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 345.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 344.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 343.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 339.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 339.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 336.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 336.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 335.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 334.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 333.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 332.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 329.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 325.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 324.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 324.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 323.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 320.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 320.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 319.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 313.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 312.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 312.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 312.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 311.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 310.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 310.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 309.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 307.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 306.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 305.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 304.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 304.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 303.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 303.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 301.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 297.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 297.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 297.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 296.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 295.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 294.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 290.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 290.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 290.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 286.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 284.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 284.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 284.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 282.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 280.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 278.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 278.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 277.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 277.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 275.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 274.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 273.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 273.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 271.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 270.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 268.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 267.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 267.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 266.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 266.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 266.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 266.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 265.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 261.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 260.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 257.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 256.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 254.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 254.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 252.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 251.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 250.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 250.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 248.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 247.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 246.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 246.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 239.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 238.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 235.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 233.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 231.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 228.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 225.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 225.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 222.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 221.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 221.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 220.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 220.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 219.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 213.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 211.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 204.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 192.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 191.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 184.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 175.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 162.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 151.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 111.9
FF:10181-103D1 60 years, female 147.7
FF:10159-103A6 76 years, female 76.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 70.1
Samples: 4

Max nTPM: 74.9
Min nTPM: 64.4
Sample A Female 74.9
Sample B Female 69.6
Sample C Male 71.5
Sample D Male 64.4
Ventral spinal cord
nTPM: 80.7
Samples: 4

Max nTPM: 91.9
Min nTPM: 67.7
Sample A Female 74.5
Sample B Female 91.9
Sample C Male 88.7
Sample D Male 67.7

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