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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:263.3 nTPM
HPA Brain:124.8 nTPM
GTEx:263.3 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:487.0 nTPM
Allen mouse:18.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.8
Sample id Sample description nTPM
Amygdala
nTPM: 124.8
2814 Male, age 76, right hemisphere 152.4
2514 Male, age 75, right hemisphere 126.9
2695 Female, age 67, right hemisphere 119.5
1987 Female, age 91, left hemisphere 117.6
2517 Female, age 94, left hemisphere 107.9
Basal amygdala
nTPM: 99.4
2609 Male, age 75, right hemisphere 118.4
2110 Male, age 80, left hemisphere 102.8
1955 Male, age 76, both hemispheres 102.4
2685 Female, age 94, left hemisphere 101.4
2243 Female, age 91, right hemisphere 98.9
2827 Female, age 67, right hemisphere 72.7
Central amygdala
nTPM: 111.8
1905 Male, age 76, both hemispheres 136.4
2826 Female, age 94, left hemisphere 126.3
2515 Male, age 75, right hemisphere 112.7
2239 Male, age 80, left hemisphere 96.7
2701 Female, age 91, right hemisphere 87.0
Corticomedial amygdala
nTPM: 102.3
2829 Male, age 80, left hemisphere 123.0
2428 Male, age 75, right hemisphere 116.0
2429 Female, age 94, left hemisphere 115.9
2242 Female, age 91, right hemisphere 98.0
2240 Male, age 76, both hemispheres 97.8
2535 Female, age 67, right hemisphere 63.1
Lateral amygdala
nTPM: 99.8
1883 Male, age 76, both hemispheres 134.9
2516 Male, age 75, right hemisphere 134.0
2534 Female, age 94, left hemisphere 112.6
2830 Female, age 67, right hemisphere 80.3
2255 Female, age 91, right hemisphere 70.3
2256 Male, age 80, left hemisphere 66.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 263.3
Samples: 152

Max nTPM: 1103.3
Min nTPM: 88.3
Std nTPM: 113.6
Median nTPM: 239.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1103.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 685.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 658.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 644.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 503.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 470.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 466.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 463.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 441.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 404.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 397.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 397.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 383.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 383.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 366.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 362.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 361.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 355.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 350.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 340.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 324.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 322.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 321.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 320.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 317.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 316.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 315.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 312.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 306.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 302.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 300.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 298.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 296.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 295.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 295.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 292.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 288.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 285.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 282.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 281.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 281.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 280.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 277.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 276.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 276.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 274.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 272.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 271.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 271.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 271.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 268.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 265.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 263.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 261.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 259.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 259.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 259.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 259.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 257.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 256.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 255.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 253.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 251.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 248.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 248.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 246.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 246.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 245.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 245.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 243.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 243.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 243.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 241.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 240.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 240.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 239.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 239.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 239.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 237.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 237.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 236.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 236.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 233.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 231.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 229.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 228.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 228.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 226.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 226.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 225.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 223.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 222.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 222.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 222.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 221.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 221.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 220.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 220.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 219.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 216.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 215.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 215.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 212.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 211.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 208.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 207.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 207.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 206.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 205.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 205.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 204.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 204.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 204.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 204.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 203.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 203.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 202.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 201.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 200.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 198.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 196.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 195.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 194.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 193.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 193.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 190.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 187.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 186.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 184.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 184.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 183.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 182.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 180.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 178.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 176.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 176.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 175.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 168.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 167.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 165.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 163.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 163.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 161.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 149.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 140.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 139.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 134.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 88.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 108.5
FF:10151-102I7 76 years, female 108.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.5
Pig sample Sample description nTPM
Amygdala
nTPM: 3.5
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 3.3
Sample C Male 4.4
Sample D Male 3.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 487.1
Samples: 4

Max nTPM: 495.5
Min nTPM: 476.8
Sample A Male 481.0
Sample B Male 494.9
Sample C Female 495.5
Sample D Female 476.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.0
576416 Antisense, RP_040826_01_G02, Mouse strain C57BL/6J (56 days, male) 22.4
1159 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 13.6
1158 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 10.8

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