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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:301.4 nTPM
HPA Brain:139.3 nTPM
GTEx:301.4 nTPM
FANTOM5:112.4 Scaled Tags Per Million
Pig:112.5 nTPM
Mouse:174.1 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.3
Sample id Sample description nTPM
Amygdala
nTPM: 139.3
2695 Female, age 67, right hemisphere 160.3
2814 Male, age 76, right hemisphere 145.9
2514 Male, age 75, right hemisphere 132.5
1987 Female, age 91, left hemisphere 131.9
2517 Female, age 94, left hemisphere 125.9
Basal amygdala
nTPM: 119.3
2110 Male, age 80, left hemisphere 132.9
2827 Female, age 67, right hemisphere 124.2
2609 Male, age 75, right hemisphere 123.3
2243 Female, age 91, right hemisphere 118.8
2685 Female, age 94, left hemisphere 109.2
1955 Male, age 76, both hemispheres 107.6
Central amygdala
nTPM: 128.7
2826 Female, age 94, left hemisphere 163.4
2515 Male, age 75, right hemisphere 141.6
1905 Male, age 76, both hemispheres 130.7
2239 Male, age 80, left hemisphere 107.9
2701 Female, age 91, right hemisphere 99.9
Corticomedial amygdala
nTPM: 117.9
2829 Male, age 80, left hemisphere 138.1
2428 Male, age 75, right hemisphere 129.5
2242 Female, age 91, right hemisphere 127.3
2535 Female, age 67, right hemisphere 105.3
2240 Male, age 76, both hemispheres 104.3
2429 Female, age 94, left hemisphere 103.0
Lateral amygdala
nTPM: 127.0
2830 Female, age 67, right hemisphere 145.0
2534 Female, age 94, left hemisphere 143.7
1883 Male, age 76, both hemispheres 134.3
2516 Male, age 75, right hemisphere 133.5
2256 Male, age 80, left hemisphere 108.8
2255 Female, age 91, right hemisphere 97.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 301.4
Samples: 152

Max nTPM: 943.5
Min nTPM: 138.9
Std nTPM: 97.3
Median nTPM: 287.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 943.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 664.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 652.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 574.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 543.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 505.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 478.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 471.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 443.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 440.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 428.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 426.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 424.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 418.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 406.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 398.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 389.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 387.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 385.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 385.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 373.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 369.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 361.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 360.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 354.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 352.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 351.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 350.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 347.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 337.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 337.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 336.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 334.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 333.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 329.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 326.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 322.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 320.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 319.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 319.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 317.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 316.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 315.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 315.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 312.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 312.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 310.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 308.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 308.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 307.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 305.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 304.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 304.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 301.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 301.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 301.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 300.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 300.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 299.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 298.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 297.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 297.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 296.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 296.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 296.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 296.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 294.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 294.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 293.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 293.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 291.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 291.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 290.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 290.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 290.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 287.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 287.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 287.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 283.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 283.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 281.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 280.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 277.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 277.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 275.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 273.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 272.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 272.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 272.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 272.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 271.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 268.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 266.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 265.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 264.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 264.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 264.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 263.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 262.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 261.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 261.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 260.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 259.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 259.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 257.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 257.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 257.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 257.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 257.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 256.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 253.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 252.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 252.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 251.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 249.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 248.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 248.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 245.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 245.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 244.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 244.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 244.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 243.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 240.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 235.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 234.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 231.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 231.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 228.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 219.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 219.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 218.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 217.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 215.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 215.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 212.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 212.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 207.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 207.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 205.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 204.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 201.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 199.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 197.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 195.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 192.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 187.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 187.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 179.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 138.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 112.4
FF:10151-102I7 76 years, female 112.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.5
Pig sample Sample description nTPM
Amygdala
nTPM: 112.5
Samples: 4

Max nTPM: 144.8
Min nTPM: 79.5
Sample A Female 144.8
Sample B Female 102.5
Sample C Male 123.3
Sample D Male 79.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 174.1
Samples: 4

Max nTPM: 181.4
Min nTPM: 161.0
Sample A Male 161.0
Sample B Male 181.4
Sample C Female 179.6
Sample D Female 174.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
69782276 Antisense, RP_050505_02_F07, Mouse strain C57BL/6J (56 days, male) 6.7

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