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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:268.9 nTPM
HPA Brain:181.6 nTPM
GTEx:268.9 nTPM
FANTOM5:134.0 Scaled Tags Per Million
Pig:164.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 159.2
2565 Male, age 75, midline 196.0
1981 Female, age 72, midline 184.2
2194 Female, age 79, both hemispheres 144.2
2816 Male, age 47, midline 135.9
2048 Male, age 55, midline 135.5
Cervical spinal cord, dorsal horn
nTPM: 152.9
2173 Female, age 72, unknown 211.8
2069 Male, age 47, both hemispheres 165.5
2296 Male, age 66, both hemispheres 159.1
2721 Male, age 90, both hemispheres 128.7
1877 Male, age 55, unknown 128.3
2297 Male, age 75, both hemispheres 123.9
Cervical spinal cord, ventral horn
nTPM: 181.6
2098 Female, age 72, unknown 231.1
2480 Male, age 75, both hemispheres 225.0
2809 Male, age 90, both hemispheres 224.1
2295 Male, age 66, both hemispheres 148.3
2068 Male, age 55, unknown 143.8
2820 Female, age 79, both hemispheres 117.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 268.9
Samples: 159

Max nTPM: 718.7
Min nTPM: 124.8
Std nTPM: 82.6
Median nTPM: 252.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 718.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 617.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 505.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 461.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 447.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 436.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 420.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 398.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 395.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 387.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 385.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 383.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 379.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 379.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 378.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 376.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 363.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 361.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 361.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 357.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 356.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 354.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 344.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 344.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 344.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 340.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 340.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 330.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 329.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 325.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 323.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 320.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 319.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 316.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 312.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 310.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 310.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 310.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 310.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 306.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 306.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 306.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 304.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 304.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 300.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 300.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 297.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 295.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 288.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 287.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 286.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 285.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 285.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 283.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 283.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 283.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 282.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 281.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 281.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 279.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 278.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 276.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 276.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 275.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 273.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 272.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 271.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 265.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 264.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 263.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 262.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 261.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 261.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 260.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 257.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 257.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 254.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 253.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 253.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 252.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 250.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 250.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 249.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 247.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 246.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 245.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 242.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 242.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 241.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 241.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 240.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 239.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 238.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 237.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 237.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 237.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 237.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 236.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 233.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 230.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 230.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 230.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 230.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 228.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 228.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 226.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 226.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 225.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 225.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 224.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 224.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 222.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 222.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 221.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 219.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 219.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 217.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 217.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 217.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 214.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 214.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 214.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 214.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 214.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 213.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 212.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 211.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 210.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 210.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 208.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 206.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 205.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 204.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 199.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 198.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 197.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 195.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 194.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 189.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 186.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 184.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 183.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 182.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 181.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 177.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 172.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 171.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 167.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 167.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 165.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 162.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 159.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 158.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 156.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 151.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 138.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 124.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 134.0
FF:10181-103D1 60 years, female 155.5
FF:10159-103A6 76 years, female 112.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 152.6
Samples: 4

Max nTPM: 212.3
Min nTPM: 125.3
Sample A Female 127.5
Sample B Female 145.2
Sample C Male 212.3
Sample D Male 125.3
Ventral spinal cord
nTPM: 164.8
Samples: 4

Max nTPM: 190.4
Min nTPM: 139.4
Sample A Female 147.5
Sample B Female 181.8
Sample C Male 190.4
Sample D Male 139.4

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