MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:334.4 nTPM
HPA Brain:168.8 nTPM
GTEx:334.4 nTPM
FANTOM5:138.4 Scaled Tags Per Million
Pig:150.5 nTPM
Mouse:137.0 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 168.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.5
2019 Male, age 18, unknown 172.0
2586 Male, age 75, left hemisphere 158.7
2666 Male, age 74, left hemisphere 154.6
1827 Male, age 72, unknown 135.6
2828 Female, age 72, unknown 134.5
2411 Female, age 72, unknown 130.4
1870 Female, age 42, unknown 129.9
1833 Male, age 53, unknown 113.1
2219 Male, age 76, both hemispheres 109.6
1830 Male, age 51, unknown 107.0
Dorsal raphe nucleus
nTPM: 155.0
2047 Male, age 72, unknown 187.5
2298 Female, age 72, unknown 171.5
1828 Male, age 53, unknown 156.4
2750 Male, age 76, both hemispheres 146.3
2016 Female, age 72, unknown 113.2
Inferior colliculus
nTPM: 127.7
1890 Male, age 53, unknown 149.3
2097 Female, age 72, unknown 144.6
1848 Female, age 42, unknown 112.6
2849 Male, age 72, unknown 104.1
Median raphe nucleus
nTPM: 151.7
2220 Male, age 76, midline 151.7
Periaquaductal grey, anterior
nTPM: 146.4
1947 Male, age 18, unknown 148.9
1795 Male, age 51, unknown 148.3
2502 Female, age 75, unknown 142.1
Periaquaductal grey, dorsal
nTPM: 111.7
2850 Male, age 76, both hemispheres 116.0
1831 Male, age 72, unknown 113.2
2464 Female, age 72, unknown 109.1
1840 Male, age 53, unknown 108.4
Periaquaductal grey, lateral
nTPM: 109.4
2272 Male, age 74, both hemispheres 123.4
2053 Male, age 18, unknown 104.8
2140 Male, age 76, both hemispheres 100.0
Pretectal area
nTPM: 136.8
2007 Male, age 72, unknown 175.1
1817 Female, age 42, unknown 171.5
1816 Male, age 51, unknown 168.2
1944 Female, age 72, unknown 167.1
1815 Male, age 53, unknown 142.8
2667 Female, age 75, unknown 132.4
2273 Male, age 74, both hemispheres 115.4
2407 Male, age 75, both hemispheres 109.6
2825 Male, age 18, unknown 109.0
2316 Male, age 76, right hemisphere 107.2
2224 Female, age 72, unknown 107.1
Red nucleus
nTPM: 144.8
1821 Female, age 72, unknown 177.4
2503 Female, age 72, unknown 171.5
2725 Female, age 75, unknown 163.6
2785 Male, age 18, unknown 152.6
1865 Male, age 51, unknown 149.0
2588 Male, age 74, left hemisphere 137.3
1904 Male, age 53, unknown 134.9
2769 Male, age 72, unknown 132.8
2584 Male, age 75, left hemisphere 132.4
2227 Male, age 72, unknown 131.8
2823 Male, age 76, right hemisphere 130.0
1954 Female, age 42, unknown 124.3
Substantia nigra
nTPM: 168.8
1916 Female, age 42, unknown 217.8
1851 Male, age 51, unknown 208.0
1889 Female, age 72, unknown 176.8
1941 Male, age 53, unknown 174.2
2665 Male, age 74, both hemispheres 173.8
2241 Male, age 72, unknown 167.8
2699 Male, age 18, unknown 147.4
2590 Female, age 75, unknown 147.0
2409 Female, age 72, unknown 142.5
2583 Male, age 75, right hemisphere 132.7
Superior colliculus
nTPM: 126.0
2087 Female, age 72, unknown 147.0
2587 Male, age 74, left hemisphere 143.0
1796 Male, age 53, unknown 141.3
2668 Female, age 75, unknown 130.4
2261 Male, age 18, unknown 129.8
2664 Male, age 75, both hemispheres 128.3
1913 Female, age 42, unknown 115.3
1895 Male, age 76, right hemisphere 110.3
1995 Male, age 72, unknown 107.5
1839 Male, age 51, unknown 106.9
Ventral tegmental area
nTPM: 146.9
1915 Female, age 42, unknown 177.5
2410 Female, age 72, unknown 157.3
2218 Male, age 76, both hemispheres 147.5
2223 Female, age 72, unknown 145.8
1942 Male, age 51, unknown 129.2
2021 Male, age 53, unknown 123.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 334.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 334.4
Samples: 139

Max nTPM: 670.8
Min nTPM: 171.8
Std nTPM: 83.0
Median nTPM: 325.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 670.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 626.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 615.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 533.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 514.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 495.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 482.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 476.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 472.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 467.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 450.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.4
FF:10158-103A5 76 years, female 138.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 150.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 150.5
Samples: 4

Max nTPM: 225.0
Min nTPM: 97.0
Sample A Female 225.0
Sample B Female 136.5
Sample C Male 143.4
Sample D Male 97.0
Midbrain
nTPM: 132.4
Samples: 4

Max nTPM: 164.9
Min nTPM: 113.0
Sample A Female 164.9
Sample B Female 137.7
Sample C Male 113.0
Sample D Male 113.9
Periaqueductal gray
nTPM: 106.8
Samples: 3

Max nTPM: 120.6
Min nTPM: 90.0
Sample B Female 109.7
Sample C Male 120.6
Sample D Male 90.0
Superior colliculi
nTPM: 134.0
Samples: 4

Max nTPM: 191.0
Min nTPM: 106.5
Sample A Female 191.0
Sample B Female 126.3
Sample C Male 112.1
Sample D Male 106.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 137.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.1
Samples: 4

Max nTPM: 151.5
Min nTPM: 123.5
Sample A Male 149.0
Sample B Male 124.2
Sample C Female 123.5
Sample D Female 151.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69782276 Antisense, RP_050505_02_F07, Mouse strain C57BL/6J (56 days, male) 4.6

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