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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:683.3 nTPM
HPA Brain:453.1 nTPM
GTEx:683.3 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:375.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

453.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 356.9
1981 Female, age 72, midline 433.0
2565 Male, age 75, midline 369.9
2048 Male, age 55, midline 362.8
2194 Female, age 79, both hemispheres 317.8
2816 Male, age 47, midline 301.2
Cervical spinal cord, dorsal horn
nTPM: 361.0
2173 Female, age 72, unknown 477.7
2069 Male, age 47, both hemispheres 430.7
2296 Male, age 66, both hemispheres 378.7
1877 Male, age 55, unknown 368.5
2721 Male, age 90, both hemispheres 279.3
2297 Male, age 75, both hemispheres 230.9
Cervical spinal cord, ventral horn
nTPM: 453.1
2809 Male, age 90, both hemispheres 563.6
2098 Female, age 72, unknown 549.2
2480 Male, age 75, both hemispheres 526.3
2295 Male, age 66, both hemispheres 413.3
2068 Male, age 55, unknown 381.9
2820 Female, age 79, both hemispheres 284.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

683.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 683.3
Samples: 159

Max nTPM: 1297.2
Min nTPM: 369.4
Std nTPM: 163.7
Median nTPM: 662.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1297.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1245.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1081.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1067.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1066.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1050.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1030.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1003.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 949.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 927.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 918.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 908.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 905.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 903.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 901.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 900.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 899.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 892.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 889.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 887.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 881.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 879.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 872.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 861.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 846.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 839.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 827.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 823.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 810.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 800.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 791.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 790.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 788.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 788.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 785.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 784.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 784.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 784.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 784.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 779.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 768.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 766.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 766.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 760.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 758.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 757.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 756.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 751.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 749.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 747.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 747.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 745.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 743.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 743.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 743.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 738.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 737.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 729.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 719.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 717.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 716.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 714.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 713.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 707.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 703.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 699.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 698.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 693.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 692.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 691.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 686.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 680.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 679.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 677.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 677.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 676.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 668.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 666.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 663.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 662.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 660.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 652.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 649.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 649.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 646.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 644.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 643.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 639.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 639.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 639.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 639.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 638.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 634.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 634.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 634.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 632.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 630.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 628.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 620.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 619.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 614.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 612.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 612.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 605.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 604.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 604.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 590.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 588.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 587.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 586.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 585.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 582.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 578.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 578.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 577.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 577.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 575.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 574.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 562.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 562.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 561.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 555.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 555.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 549.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 548.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 547.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 538.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 533.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 531.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 530.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 529.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 528.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 527.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 527.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 526.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 526.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 526.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 522.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 516.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 513.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 512.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 511.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 495.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 483.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 481.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 479.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 477.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 477.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 471.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 468.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 467.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 447.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 444.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 436.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 429.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 421.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 401.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 377.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 369.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29.0
FF:10181-103D1 60 years, female 34.5
FF:10159-103A6 76 years, female 23.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 375.7
Samples: 4

Max nTPM: 531.7
Min nTPM: 300.7
Sample A Female 302.4
Sample B Female 368.1
Sample C Male 531.7
Sample D Male 300.7
Ventral spinal cord
nTPM: 372.7
Samples: 4

Max nTPM: 428.1
Min nTPM: 332.8
Sample A Female 332.8
Sample B Female 387.3
Sample C Male 428.1
Sample D Male 342.7

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