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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:75.3 nTPM

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA020361
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.3
Sample id Sample description nTPM
Hippocampus
nTPM: 59.8
2148 Female, age 91, left hemisphere 84.5
2529 Female, age 94, left hemisphere 67.0
1898 Male, age 80, left hemisphere 58.5
1911 Female, age 85, right hemisphere 53.6
2621 Female, age 67, right hemisphere 49.1
1855 Male, age 76, left hemisphere 46.2
Dentate gyrus
nTPM: 48.9
2528 Male, age 74, both hemispheres 73.6
2246 Female, age 85, both hemispheres 56.0
2530 Female, age 94, left hemisphere 49.5
1927 Female, age 91, both hemispheres 45.8
2531 Female, age 67, both hemispheres 40.7
2010 Male, age 76, both hemispheres 27.6
Entorhinal gyrus
nTPM: 48.4
2117 Female, age 91, right hemisphere 69.0
2686 Male, age 75, right hemisphere 51.7
2764 Male, age 80, right hemisphere 44.4
1787 Male, age 76, left hemisphere 44.2
2613 Female, age 94, left hemisphere 41.3
1938 Female, age 85, left hemisphere 39.6
Hippocampus, CA1
nTPM: 48.7
2527 Male, age 74, both hemispheres 77.7
1873 Female, age 85, both hemispheres 54.0
2082 Female, age 91, right hemisphere 52.4
2045 Male, age 76, both hemispheres 30.0
2749 Male, age 80, left hemisphere 29.5
Hippocampus, CA2
nTPM: 49.0
2249 Male, age 74, both hemispheres 70.4
2113 Female, age 91, right hemisphere 65.8
1963 Male, age 80, left hemisphere 46.5
2437 Female, age 94, left hemisphere 46.5
1940 Female, age 85, left hemisphere 43.0
1892 Male, age 76, both hemispheres 21.8
Hippocampus, CA3
nTPM: 75.3
2436 Male, age 74, both hemispheres 229.4
2861 Female, age 67, both hemispheres 63.8
2620 Female, age 94, left hemisphere 50.4
1891 Female, age 85, both hemispheres 49.0
2137 Male, age 80, left hemisphere 30.5
1867 Male, age 76, both hemispheres 28.6
Parahippocampal cortex
nTPM: 48.1
2692 Male, age 74, both hemispheres 77.7
2622 Female, age 67, right hemisphere 65.8
2250 Female, age 67, right hemisphere 53.6
2245 Female, age 91, both hemispheres 50.8
1990 Female, age 91, right hemisphere 48.6
1933 Female, age 85, both hemispheres 42.8
2693 Female, age 94, both hemispheres 38.7
1850 Male, age 80, both hemispheres 38.5
2532 Female, age 72, left hemisphere 33.8
2018 Male, age 76, both hemispheres 31.0
Perirhinal gyrus
nTPM: 38.8
1794 Male, age 80, right hemisphere 49.7
1847 Female, age 91, left hemisphere 47.9
2521 Female, age 94, right hemisphere 35.4
1841 Female, age 85, right hemisphere 33.5
2848 Male, age 76, right hemisphere 27.6
Subiculum
nTPM: 52.3
2619 Male, age 74, both hemispheres 84.5
2729 Female, age 91, right hemisphere 81.4
2438 Female, age 94, left hemisphere 44.8
1977 Female, age 85, both hemispheres 38.6
1901 Male, age 80, both hemispheres 33.8
2042 Male, age 76, both hemispheres 30.8

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