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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
221.6
Sample id
Sample description
nTPM
Amygdala nTPM: 206.8
2814
Male, age 76, right hemisphere
550.1
2517
Female, age 94, left hemisphere
159.8
1987
Female, age 91, left hemisphere
134.2
2514
Male, age 75, right hemisphere
98.6
2695
Female, age 67, right hemisphere
91.2
Basal amygdala nTPM: 213.7
1955
Male, age 76, both hemispheres
300.9
2243
Female, age 91, right hemisphere
281.0
2110
Male, age 80, left hemisphere
249.7
2685
Female, age 94, left hemisphere
228.3
2827
Female, age 67, right hemisphere
149.9
2609
Male, age 75, right hemisphere
72.2
Central amygdala nTPM: 221.6
1905
Male, age 76, both hemispheres
475.4
2239
Male, age 80, left hemisphere
232.9
2826
Female, age 94, left hemisphere
178.6
2701
Female, age 91, right hemisphere
140.1
2515
Male, age 75, right hemisphere
81.2
Corticomedial amygdala nTPM: 213.7
2240
Male, age 76, both hemispheres
310.0
2829
Male, age 80, left hemisphere
233.8
2242
Female, age 91, right hemisphere
232.6
2535
Female, age 67, right hemisphere
228.1
2429
Female, age 94, left hemisphere
192.8
2428
Male, age 75, right hemisphere
85.1
Lateral amygdala nTPM: 211.6
1883
Male, age 76, both hemispheres
527.4
2534
Female, age 94, left hemisphere
318.1
2255
Female, age 91, right hemisphere
143.9
2256
Male, age 80, left hemisphere
137.4
2830
Female, age 67, right hemisphere
75.1
2516
Male, age 75, right hemisphere
67.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 35.1
Samples: 152
Max nTPM: 172.6
Min nTPM: 2.3
Std nTPM: 32.1
Median nTPM: 23.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
172.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
156.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
155.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
134.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
118.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
109.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
95.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
91.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
88.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
88.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
86.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
86.4
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
84.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
84.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
84.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
83.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
73.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
69.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
67.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
67.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
65.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
65.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
63.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
62.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
61.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
60.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
60.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
59.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
59.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
58.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
57.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
55.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
55.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
54.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
53.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
52.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
52.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
52.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
52.2
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
51.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
48.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
48.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
48.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
47.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
44.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
41.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
41.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
40.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
39.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
37.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
37.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
36.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
36.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
35.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
35.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
35.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
34.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
34.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
33.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
32.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
32.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
31.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
30.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
30.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
27.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
27.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
27.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
26.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
26.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
25.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
25.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
25.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
24.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
24.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
23.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
22.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
22.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
22.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
22.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
21.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
20.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
20.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
19.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
19.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
19.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
19.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
18.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
18.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
18.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
18.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
18.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
17.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
16.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
16.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
16.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
16.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
16.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
16.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
15.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
15.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
14.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
14.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
13.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
13.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
13.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
13.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
13.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
13.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
13.4
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
13.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
13.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
12.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
12.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
12.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
12.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
12.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
12.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
11.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
11.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
11.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
10.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
10.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
10.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
9.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
9.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
9.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
8.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
8.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
8.5
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
7.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
7.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
7.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
6.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
6.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
6.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
6.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
6.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
6.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
5.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
5.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
5.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
5.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
5.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
4.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
4.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
4.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
3.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
3.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
3.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
2.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
192.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 192.1
Samples: 4
Max nTPM: 218.4
Min nTPM: 175.8
Sample A
Male
194.8
Sample B
Male
179.2
Sample C
Female
218.4
Sample D
Female
175.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
