We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NEFL
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NEFL
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

108.389
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1134.7 nTPM
FANTOM5:720.2 Scaled Tags Per Million
Pig:754.7 nTPM
Allen mouse:15.6 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA014850
Medulla oblongata mean intensity 108.389
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 52.625
Raphe magnus nucleus 53.090
Cochlear nucleus 99.341
Lateral paragigantocellular nucleus 108.389
Raphe pallidus nucleus 63.190
Facial nucleus 68.431
Hypoglossal nucleus 79.483
Ambiguus nucleus 79.053
External cuneate nucleus 47.486
Inferior olivary nucleus 61.604
Raphe obscures nucleus 63.947
Dorsal motor nucleus of vagus 28.099

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1134.7
Sample id Sample description nTPM
Area postrema
nTPM: 143.6
2054 Male, age 76, both hemispheres 279.1
2306 Male, age 80, both hemispheres 125.5
2799 Male, age 61, both hemispheres 26.4
Dorsal medullary reticular nucleus
nTPM: 452.7
2040 Female, age 85, both hemispheres 689.8
2373 Male, age 61, both hemispheres 362.9
2088 Male, age 76, both hemispheres 305.2
Dorsal motor vagal complex
nTPM: 342.7
2133 Female, age 91, both hemispheres 1072.3
2000 Male, age 74, unknown 429.3
2813 Female, age 72, unknown 273.4
2185 Male, age 76, both hemispheres 254.2
2844 Male, age 55, unknown 245.9
2807 Female, age 85, both hemispheres 170.9
2643 Male, age 74, both hemispheres 156.2
2797 Male, age 61, both hemispheres 139.6
Gigantocellular reticular nuclei, medullary
nTPM: 433.6
2462 Male, age 74, both hemispheres 859.9
2387 Female, age 91, both hemispheres 400.2
2310 Male, age 80, both hemispheres 378.5
2022 Male, age 76, right hemisphere 357.4
1876 Female, age 85, both hemispheres 320.2
2314 Male, age 61, both hemispheres 285.1
Gigantocellular reticular nuclei, pars
nTPM: 463.0
2168 Male, age 76, both hemispheres 692.9
2336 Male, age 61, both hemispheres 507.6
2084 Female, age 85, both hemispheres 427.3
2330 Male, age 80, both hemispheres 379.3
2706 Male, age 80, both hemispheres 307.9
Inferior olive
nTPM: 245.3
2085 Female, age 85, both hemispheres 457.2
2628 Female, age 91, both hemispheres 260.9
2178 Male, age 61, both hemispheres 181.2
2379 Male, age 80, both hemispheres 179.1
2563 Male, age 74, both hemispheres 148.2
Lateral medullary reticular nucleus
nTPM: 332.7
2044 Male, age 76, both hemispheres 597.5
2374 Male, age 61, both hemispheres 405.9
2190 Female, age 85, both hemispheres 354.7
2804 Female, age 91, both hemispheres 337.0
2305 Male, age 74, both hemispheres 173.3
2852 Male, age 80, both hemispheres 127.5
Medial olivary nucleus
nTPM: 96.4
2851 Male, age 80, both hemispheres 174.4
1962 Male, age 76, both hemispheres 114.3
2138 Female, age 91, both hemispheres 68.4
1943 Male, age 61, both hemispheres 28.5
Medial vestibular nucleus
nTPM: 850.9
2624 Male, age 61, both hemispheres 1453.2
2801 Male, age 74, both hemispheres 1102.7
2134 Male, age 76, both hemispheres 867.1
2803 Female, age 91, both hemispheres 772.2
2093 Male, age 80, both hemispheres 490.6
2743 Female, age 85, both hemispheres 419.3
Motor hypoglossal nucleus
nTPM: 784.6
2461 Male, age 61, both hemispheres 2053.4
2125 Female, age 91, both hemispheres 723.7
2132 Female, age 85, both hemispheres 572.5
2182 Male, age 80, both hemispheres 375.8
2277 Male, age 76, both hemispheres 197.6
Nucleus ambiguus
nTPM: 299.8
2096 Female, age 85, both hemispheres 440.3
2071 Male, age 76, both hemispheres 159.2
Nucleus cuneatus
nTPM: 348.7
2131 Male, age 76, both hemispheres 751.5
2100 Male, age 76, both hemispheres 620.5
2564 Male, age 74, both hemispheres 421.9
2376 Male, age 61, both hemispheres 337.2
2381 Male, age 80, both hemispheres 256.5
2562 Male, age 61, both hemispheres 231.6
2805 Female, age 91, both hemispheres 214.2
2808 Female, age 85, both hemispheres 171.3
2380 Male, age 80, both hemispheres 133.5
Nucleus gracilis
nTPM: 152.0
2299 Female, age 85, both hemispheres 176.1
2627 Male, age 74, both hemispheres 162.2
2382 Male, age 80, both hemispheres 117.5
Nucleus raphe obscurus
nTPM: 265.4
2800 Male, age 61, midline 395.4
2845 Female, age 85, midline 371.6
2142 Male, age 76, midline 29.3
Nucleus raphe pallidus
nTPM: 219.1
2183 Male, age 80, midline 373.0
1924 Male, age 61, midline 238.4
2145 Male, age 76, midline 45.9
Nucleus tractus solitarii
nTPM: 451.0
2144 Female, age 91, right hemisphere 831.6
2191 Female, age 85, both hemispheres 529.4
2307 Male, age 80, both hemispheres 242.0
2656 Male, age 76, both hemispheres 201.0
Parvicellular reticular nuclei
nTPM: 505.6
2558 Male, age 74, both hemispheres 705.1
2095 Male, age 76, both hemispheres 437.6
2119 Male, age 80, both hemispheres 374.1
Parvicellular reticular nuclei, medullary
nTPM: 622.3
2091 Female, age 85, both hemispheres 817.7
2189 Female, age 91, both hemispheres 737.3
2181 Male, age 80, left hemisphere 312.0
Peritrigeminal nucleus
nTPM: 472.5
2136 Male, age 76, both hemispheres 518.1
2179 Male, age 61, both hemispheres 507.8
2067 Female, age 85, both hemispheres 391.5
Prepositus hypoglossal nucleus
nTPM: 475.8
2855 Female, age 85, right hemisphere 690.5
2086 Male, age 80, both hemispheres 261.2
Spinal trigeminal nucleus, caudal
nTPM: 697.2
2390 Female, age 91, both hemispheres 2032.5
2447 Male, age 76, both hemispheres 672.5
2642 Male, age 74, both hemispheres 267.4
2308 Male, age 80, both hemispheres 258.6
2312 Male, age 61, both hemispheres 255.4
Spinal trigeminal nucleus, interpolar
nTPM: 1134.7
2625 Male, age 61, both hemispheres 3381.4
2066 Male, age 76, right hemisphere 806.0
2389 Female, age 91, both hemispheres 669.9
2033 Male, age 80, both hemispheres 426.5
2386 Female, age 85, both hemispheres 389.8
Spinal vestibular nucleus
nTPM: 450.7
2186 Female, age 91, both hemispheres 586.5
2796 Male, age 61, both hemispheres 512.0
2806 Female, age 85, both hemispheres 495.5
2384 Male, age 74, both hemispheres 389.9
2780 Male, age 80, both hemispheres 377.7
2748 Male, age 76, both hemispheres 342.7
Superior vestibular nucleus
nTPM: 305.6
2015 Male, age 80, both hemispheres 422.4
2383 Male, age 74, both hemispheres 248.8
2061 Male, age 76, both hemispheres 245.6
Ventral medullary reticular nucleus
nTPM: 318.9
2372 Male, age 61, both hemispheres 358.1
2060 Male, age 76, both hemispheres 279.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 415.3
2741 Female, age 85, both hemispheres 560.7
1986 Male, age 76, both hemispheres 502.9
2180 Male, age 61, both hemispheres 397.8
2302 Female, age 91, both hemispheres 381.1
2118 Male, age 80, both hemispheres 233.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

720.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 720.2
FF:10038-101F2 18-64 years, mixed 1430.3
FF:10155-103A2 76 years, female 425.0
FF:10174-103C3 60 years, female 305.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

754.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 754.8
Samples: 4

Max nTPM: 1115.5
Min nTPM: 455.5
Sample A Female 766.9
Sample B Female 1115.5
Sample C Male 681.1
Sample D Male 455.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 15.6
73512198 Antisense, RP_050712_04_B04, Mouse strain C57BL/6J (56 days, male) 15.6
70919083 Antisense, RP_050712_04_B04, Mouse strain C57BL/6J (56 days, male) 10.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org