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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
788.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 286.2
1984
Male, age 76, both hemispheres
383.1
2301
Female, age 85, both hemispheres
316.4
2188
Female, age 91, both hemispheres
263.1
2090
Male, age 80, both hemispheres
182.1
Dorsal cochlear nucleus nTPM: 333.9
2802
Male, age 74, right hemisphere
487.2
2187
Female, age 91, both hemispheres
329.1
2370
Male, age 61, both hemispheres
319.5
2378
Male, age 80, both hemispheres
271.7
2058
Male, age 76, both hemispheres
262.0
Dorsal tegmental nucleus nTPM: 310.6
2083
Male, age 80, both hemispheres
337.2
2358
Male, age 61, both hemispheres
332.5
1936
Male, age 76, left hemisphere
290.2
2326
Male, age 74, both hemispheres
282.5
Dorsolateral tegmental area nTPM: 224.6
2654
Male, age 80, both hemispheres
284.6
2751
Female, age 85, both hemispheres
282.7
2141
Male, age 76, both hemispheres
251.7
2360
Male, age 74, both hemispheres
223.5
2337
Male, age 61, both hemispheres
80.7
Kolliker-Fuse nucleus nTPM: 581.6
2163
Male, age 80, both hemispheres
1136.2
2793
Female, age 91, left hemisphere
397.4
2315
Male, age 76, right hemisphere
211.2
Lateral lemniscal nuclei nTPM: 670.2
2453
Male, age 74, right hemisphere
1113.3
2169
Male, age 76, both hemispheres
806.6
2320
Female, age 91, left hemisphere
495.1
2746
Female, age 85, left hemisphere
492.9
2036
Male, age 80, both hemispheres
443.0
Lateral parabrachial nucleus nTPM: 357.9
2139
Female, age 85, right hemisphere
601.0
2790
Male, age 61, both hemispheres
379.8
2013
Male, age 80, both hemispheres
322.4
2792
Male, age 76, both hemispheres
128.4
Lateral vestibular nucleus nTPM: 648.7
2184
Male, age 76, both hemispheres
1011.7
2311
Male, age 80, both hemispheres
285.7
Locus coeruleus nTPM: 595.3
2720
Male, age 74, both hemispheres
1217.0
2123
Female, age 91, both hemispheres
875.1
2014
Male, age 55, unknown
469.6
2788
Male, age 74, unknown
465.7
1980
Male, age 76, both hemispheres
404.4
2317
Female, age 72, unknown
397.4
2162
Male, age 80, both hemispheres
337.9
Medial parabrachial nucleus nTPM: 378.8
2156
Male, age 61, both hemispheres
669.1
2854
Male, age 80, both hemispheres
452.2
2786
Male, age 76, both hemispheres
293.2
2170
Female, age 91, both hemispheres
277.4
2463
Female, age 85, right hemisphere
202.2
Medial periolivary nuclei nTPM: 529.1
2171
Female, age 85, both hemispheres
775.8
2063
Male, age 76, both hemispheres
712.1
2458
Female, age 91, both hemispheres
473.7
2791
Male, age 74, right hemisphere
435.7
2081
Male, age 80, both hemispheres
248.1
Motor facial nucleus nTPM: 580.3
2062
Male, age 76, both hemispheres
742.5
2365
Male, age 74, right hemisphere
733.3
2327
Male, age 80, both hemispheres
613.2
2697
Female, age 85, both hemispheres
507.3
2795
Female, age 91, both hemispheres
499.6
2126
Male, age 61, both hemispheres
385.9
Motor trigeminal nucleus nTPM: 387.5
2079
Male, age 80, both hemispheres
524.2
2560
Male, age 74, both hemispheres
455.8
2321
Female, age 91, both hemispheres
358.8
2335
Male, age 61, both hemispheres
323.8
2309
Male, age 76, both hemispheres
274.8
Nuclei of the trapezoid body nTPM: 682.5
2159
Male, age 61, both hemispheres
1084.7
1983
Male, age 76, both hemispheres
675.1
2735
Female, age 85, both hemispheres
650.8
2368
Female, age 91, both hemispheres
553.9
2166
Male, age 80, both hemispheres
447.9
Nucleus raphe magnus nTPM: 788.0
2160
Male, age 61, both hemispheres
1210.8
2455
Male, age 74, both hemispheres
1190.4
2172
Female, age 85, both hemispheres
812.3
2328
Male, age 80, both hemispheres
556.2
2459
Female, age 91, both hemispheres
529.9
2051
Male, age 76, both hemispheres
428.3
Paramedian reticular nucleus nTPM: 518.5
2050
Female, age 85, both hemispheres
689.0
2313
Male, age 61, both hemispheres
627.8
2057
Male, age 80, both hemispheres
472.3
2052
Male, age 76, both hemispheres
285.0
Pedunculopontine tegmental nucleus nTPM: 314.8
2334
Male, age 80, both hemispheres
365.8
2338
Male, age 61, both hemispheres
311.6
1921
Female, age 85, both hemispheres
266.9
Pontine nuclei nTPM: 616.5
2727
Male, age 61, right hemisphere
1046.5
2787
Female, age 85, both hemispheres
798.2
1863
Male, age 55, unknown
711.9
2454
Male, age 74, left hemisphere
612.7
1968
Male, age 76, left hemisphere
606.0
2109
Female, age 72, unknown
573.3
2319
Female, age 91, both hemispheres
294.5
2115
Male, age 80, left hemisphere
288.7
Pontine raphe nucleus nTPM: 406.7
2122
Female, age 85, midline
611.2
2853
Male, age 76, midline
202.3
Posteroventral cochlear nucleus nTPM: 302.2
2752
Female, age 85, both hemispheres
499.3
2070
Male, age 76, both hemispheres
433.1
2371
Male, age 61, both hemispheres
337.6
2341
Male, age 80, both hemispheres
220.6
2135
Female, age 91, both hemispheres
20.6
Principal sensory trigeminal nucleus nTPM: 708.3
2158
Male, age 61, both hemispheres
985.4
2324
Male, age 76, both hemispheres
821.5
2008
Male, age 80, left hemisphere
569.0
2367
Female, age 91, left hemisphere
457.2
Reticular pontine nucleus, caudal nTPM: 480.7
2332
Male, age 80, right hemisphere
697.6
2092
Male, age 76, both hemispheres
502.2
2457
Female, age 91, both hemispheres
481.1
2559
Male, age 74, both hemispheres
241.8
Reticular pontine nucleus, oral nTPM: 417.7
2361
Male, age 74, both hemispheres
616.6
2012
Female, age 85, both hemispheres
519.5
2366
Female, age 91, both hemispheres
424.4
1939
Male, age 80, both hemispheres
267.0
2167
Male, age 76, both hemispheres
260.8
Reticulotegmental nucleus nTPM: 520.5
2322
Female, age 91, both hemispheres
616.5
2452
Male, age 74, both hemispheres
555.6
2325
Male, age 76, both hemispheres
501.8
2333
Male, age 80, both hemispheres
408.0
Spinal trigeminal nucleus, oral nTPM: 702.5
2164
Male, age 80, both hemispheres
1076.9
2737
Female, age 85, both hemispheres
757.3
1978
Male, age 76, both hemispheres
273.2
Subcoeruleus area nTPM: 391.5
2089
Male, age 76, left hemisphere
491.8
2323
Female, age 91, left hemisphere
474.1
1958
Male, age 80, both hemispheres
465.6
2451
Male, age 74, both hemispheres
314.6
2369
Female, age 85, left hemisphere
211.5
Superior olive nTPM: 548.2
1875
Female, age 85, both hemispheres
750.1
2364
Male, age 74, right hemisphere
545.5
2561
Female, age 91, both hemispheres
490.9
2329
Male, age 80, right hemisphere
482.0
2020
Male, age 76, both hemispheres
472.6
Ventral periolivary nuclei nTPM: 574.1
2165
Male, age 80, both hemispheres
678.6
2130
Female, age 85, both hemispheres
646.3
2794
Female, age 91, left hemisphere
543.5
2023
Male, age 76, both hemispheres
428.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 517.1
2449
Male, age 74, both hemispheres
929.9
2840
Female, age 85, both hemispheres
619.4
1959
Male, age 76, both hemispheres
494.2
2161
Male, age 80, both hemispheres
436.8
2456
Female, age 91, both hemispheres
392.8
2359
Male, age 61, both hemispheres
229.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
623.7
Pig sample
Sample description
nTPM
Pons nTPM: 623.7
Samples: 4
Max nTPM: 1036.1
Min nTPM: 319.2
Sample A
Female
660.7
Sample B
Female
319.2
Sample C
Male
478.7
Sample D
Male
1036.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
