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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:362.1 nTPM
HPA Brain:691.6 nTPM
GTEx:362.1 nTPM
FANTOM5:448.3 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:257.9 nTPM
Allen mouse:3.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

691.6
Sample id Sample description nTPM
Amygdala
nTPM: 578.5
2695 Female, age 67, right hemisphere 831.9
2814 Male, age 76, right hemisphere 814.1
1987 Female, age 91, left hemisphere 419.7
2514 Male, age 75, right hemisphere 415.7
2517 Female, age 94, left hemisphere 411.3
Basal amygdala
nTPM: 542.4
2827 Female, age 67, right hemisphere 1058.0
1955 Male, age 76, both hemispheres 505.8
2609 Male, age 75, right hemisphere 479.3
2685 Female, age 94, left hemisphere 455.1
2110 Male, age 80, left hemisphere 387.5
2243 Female, age 91, right hemisphere 368.5
Central amygdala
nTPM: 633.6
2826 Female, age 94, left hemisphere 1110.7
1905 Male, age 76, both hemispheres 717.3
2515 Male, age 75, right hemisphere 573.6
2239 Male, age 80, left hemisphere 383.4
2701 Female, age 91, right hemisphere 383.1
Corticomedial amygdala
nTPM: 419.3
2535 Female, age 67, right hemisphere 579.5
2240 Male, age 76, both hemispheres 472.5
2428 Male, age 75, right hemisphere 408.3
2829 Male, age 80, left hemisphere 389.7
2242 Female, age 91, right hemisphere 388.5
2429 Female, age 94, left hemisphere 277.3
Lateral amygdala
nTPM: 691.6
2830 Female, age 67, right hemisphere 1483.1
1883 Male, age 76, both hemispheres 636.5
2516 Male, age 75, right hemisphere 623.1
2534 Female, age 94, left hemisphere 573.1
2256 Male, age 80, left hemisphere 477.4
2255 Female, age 91, right hemisphere 356.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

362.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 362.1
Samples: 152

Max nTPM: 941.3
Min nTPM: 77.8
Std nTPM: 165.2
Median nTPM: 307.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 941.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 899.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 872.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 871.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 807.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 790.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 769.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 736.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 717.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 714.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 691.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 671.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 665.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 621.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 593.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 593.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 586.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 566.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 563.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 559.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 558.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 534.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 517.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 513.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 500.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 466.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 463.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 462.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 460.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 459.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 458.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 457.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 456.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 443.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 442.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 442.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 436.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 435.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 428.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 421.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 412.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 410.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 404.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 399.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 397.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 395.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 390.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 382.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 381.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 377.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 375.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 374.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 373.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 373.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 365.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 362.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 360.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 357.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 355.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 351.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 348.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 343.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 339.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 338.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 336.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 334.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 322.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 322.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 322.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 320.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 318.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 311.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 311.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 310.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 309.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 307.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 307.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 302.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 300.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 300.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 293.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 291.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 290.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 289.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 286.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 284.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 284.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 284.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 282.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 280.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 279.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 278.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 277.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 274.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 273.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 270.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 270.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 270.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 268.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 268.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 267.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 267.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 266.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 263.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 258.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 258.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 258.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 257.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 253.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 252.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 252.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 251.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 250.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 250.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 247.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 246.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 246.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 245.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 243.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 240.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 238.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 237.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 236.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 235.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 233.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 231.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 231.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 229.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 229.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 228.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 227.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 227.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 223.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 221.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 219.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 219.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 216.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 215.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 215.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 213.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 213.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 206.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 204.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 202.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 201.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 199.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 196.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 191.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 188.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 177.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 173.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 77.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

448.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 448.3
FF:10151-102I7 76 years, female 448.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.5
Pig sample Sample description nTPM
Amygdala
nTPM: 79.5
Samples: 4

Max nTPM: 89.2
Min nTPM: 70.1
Sample A Female 89.2
Sample B Female 79.9
Sample C Male 70.1
Sample D Male 78.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 257.9
Samples: 4

Max nTPM: 282.2
Min nTPM: 242.0
Sample A Male 260.6
Sample B Male 246.9
Sample C Female 282.2
Sample D Female 242.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.0
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 3.1
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 2.9

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