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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:875.4 nTPM
FANTOM5:669.8 Scaled Tags Per Million
Pig:272.6 nTPM
Mouse:401.1 nTPM
Allen mouse:11.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

875.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 612.3
2032 Female, age 42, unknown 742.2
2497 Male, age 66, unknown 665.9
2396 Male, age 61, right hemisphere 428.8
Centromedial thalamic nucleus
nTPM: 677.3
2401 Male, age 76, right hemisphere 822.0
2279 Female, age 85, left hemisphere 532.6
Habenula
nTPM: 499.5
1957 Male, age 80, both hemispheres 608.5
2203 Male, age 61, left hemisphere 506.7
2252 Male, age 62, unknown 458.2
2276 Male, age 66, unknown 424.4
Lateral geniculate body
nTPM: 721.2
2659 Male, age 66, unknown 860.6
2035 Female, age 72, unknown 834.0
2575 Female, age 94, right hemisphere 799.9
2857 Male, age 74, right hemisphere 762.1
1953 Male, age 62, unknown 681.0
2399 Male, age 61, left hemisphere 662.0
2841 Male, age 80, both hemispheres 645.0
2106 Female, age 67, right hemisphere 524.9
Lateral thalamic nuclei
nTPM: 702.4
2577 Male, age 74, both hemispheres 807.8
2661 Female, age 72, unknown 787.0
2573 Female, age 94, left hemisphere 777.5
1903 Male, age 76, left hemisphere 675.4
2765 Female, age 67, both hemispheres 464.3
Medial dorsal thalamic nucleus
nTPM: 626.9
2572 Female, age 94, right hemisphere 1120.7
1859 Male, age 76, both hemispheres 760.3
2660 Female, age 72, unknown 743.7
2576 Male, age 74, both hemispheres 683.4
1810 Male, age 48, unknown 647.8
2283 Male, age 80, right hemisphere 598.1
1930 Female, age 42, unknown 585.6
2026 Male, age 62, unknown 567.0
2492 Male, age 75, right hemisphere 531.9
2039 Female, age 72, unknown 517.9
1971 Male, age 61, right hemisphere 487.5
2498 Male, age 66, unknown 485.7
2402 Female, age 67, both hemispheres 419.8
Medial geniculate body
nTPM: 687.3
2571 Male, age 75, right hemisphere 996.8
1811 Female, age 42, unknown 722.8
2207 Male, age 80, right hemisphere 715.1
2650 Female, age 94, left hemisphere 700.7
2217 Female, age 72, unknown 635.7
2657 Male, age 74, right hemisphere 589.4
2049 Male, age 76, both hemispheres 450.8
Nucleus reuniens
nTPM: 522.4
2210 Female, age 85, left hemisphere 695.4
2205 Male, age 80, left hemisphere 532.0
2212 Female, age 67, left hemisphere 339.7
Nucleus rhomboideus
nTPM: 586.8
2280 Female, age 85, left hemisphere 769.0
2206 Male, age 80, both hemispheres 639.6
2213 Female, age 67, left hemisphere 351.9
Posterior thalamic nucleus
nTPM: 875.4
2649 Female, age 94, both hemispheres 1615.5
2655 Male, age 74, right hemisphere 781.4
2266 Male, age 76, right hemisphere 709.5
2495 Female, age 67, right hemisphere 395.3
Pulvinar
nTPM: 641.6
2214 Male, age 76, right hemisphere 689.2
2724 Male, age 74, right hemisphere 687.9
1899 Female, age 42, unknown 682.2
1932 Male, age 80, right hemisphere 667.0
1929 Male, age 48, unknown 648.2
1972 Male, age 62, unknown 640.4
2398 Male, age 61, left hemisphere 624.4
2582 Female, age 72, unknown 620.6
2496 Female, age 67, right hemisphere 598.6
2499 Male, age 66, unknown 557.4
Subthalamic nucleus
nTPM: 586.6
2658 Male, age 74, both hemispheres 827.7
2275 Male, age 66, unknown 723.3
2124 Male, age 62, unknown 627.4
2282 Male, age 61, both hemispheres 600.7
2056 Female, age 72, unknown 537.8
2779 Female, age 42, unknown 495.4
2216 Male, age 48, unknown 475.7
2406 Female, age 72, unknown 404.8
Ventral posterolateral thalamic nucleus
nTPM: 680.0
2581 Female, age 72, unknown 837.9
2578 Male, age 74, both hemispheres 790.4
2740 Male, age 76, right hemisphere 750.2
2570 Male, age 75, right hemisphere 580.4
2397 Male, age 61, right hemisphere 564.6
2197 Male, age 80, both hemispheres 556.4
Ventral posteromedial thalamic nucleus
nTPM: 607.0
2653 Male, age 74, both hemispheres 783.4
2127 Male, age 76, right hemisphere 607.8
2758 Male, age 80, both hemispheres 579.0
2281 Male, age 75, right hemisphere 539.0
2202 Male, age 61, left hemisphere 525.7
Ventral thalamic nuclei
nTPM: 717.1
2580 Male, age 66, unknown 936.2
2858 Female, age 72, unknown 791.9
1845 Male, age 48, unknown 790.1
1860 Male, age 76, both hemispheres 783.8
2652 Male, age 74, left hemisphere 698.6
2204 Male, age 80, both hemispheres 668.1
1912 Female, age 42, unknown 613.3
2291 Female, age 72, unknown 593.2
2285 Male, age 62, unknown 579.3
Zona incerta
nTPM: 661.6
2822 Male, age 74, right hemisphere 914.7
2663 Female, age 72, unknown 734.9
2403 Male, age 62, unknown 574.1
2215 Male, age 66, unknown 551.1
2208 Male, age 80, right hemisphere 533.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

669.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 669.8
FF:10154-103A1 76 years, female 669.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.6
Pig sample Sample description nTPM
Thalamus
nTPM: 272.6
Samples: 4

Max nTPM: 364.4
Min nTPM: 166.3
Sample A Female 364.4
Sample B Female 166.3
Sample C Male 340.7
Sample D Male 219.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 401.1
Samples: 4

Max nTPM: 436.3
Min nTPM: 378.0
Sample A Male 379.9
Sample B Male 436.3
Sample C Female 378.0
Sample D Female 410.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 11.1
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 11.3
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 10.8

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