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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:585.3 nTPM
FANTOM5:215.4 Scaled Tags Per Million
Pig:167.3 nTPM
Allen mouse:8.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

585.3
Sample id Sample description nTPM
Area postrema
nTPM: 484.6
2799 Male, age 61, both hemispheres 557.8
2306 Male, age 80, both hemispheres 539.2
2054 Male, age 76, both hemispheres 356.7
Dorsal medullary reticular nucleus
nTPM: 475.4
2373 Male, age 61, both hemispheres 512.2
2088 Male, age 76, both hemispheres 504.2
2040 Female, age 85, both hemispheres 409.7
Dorsal motor vagal complex
nTPM: 464.2
2797 Male, age 61, both hemispheres 656.4
2185 Male, age 76, both hemispheres 548.5
2643 Male, age 74, both hemispheres 512.4
2807 Female, age 85, both hemispheres 437.3
2000 Male, age 74, unknown 436.5
2844 Male, age 55, unknown 405.2
2133 Female, age 91, both hemispheres 363.7
2813 Female, age 72, unknown 353.7
Gigantocellular reticular nuclei, medullary
nTPM: 431.1
2314 Male, age 61, both hemispheres 605.8
2387 Female, age 91, both hemispheres 466.0
2310 Male, age 80, both hemispheres 455.3
1876 Female, age 85, both hemispheres 385.9
2022 Male, age 76, right hemisphere 353.0
2462 Male, age 74, both hemispheres 320.5
Gigantocellular reticular nuclei, pars
nTPM: 471.7
2330 Male, age 80, both hemispheres 517.5
2336 Male, age 61, both hemispheres 493.3
2706 Male, age 80, both hemispheres 468.0
2084 Female, age 85, both hemispheres 449.0
2168 Male, age 76, both hemispheres 430.8
Inferior olive
nTPM: 506.4
2628 Female, age 91, both hemispheres 593.6
2178 Male, age 61, both hemispheres 533.4
2379 Male, age 80, both hemispheres 473.9
2085 Female, age 85, both hemispheres 471.0
2563 Male, age 74, both hemispheres 459.9
Lateral medullary reticular nucleus
nTPM: 504.8
2852 Male, age 80, both hemispheres 573.3
2374 Male, age 61, both hemispheres 568.4
2305 Male, age 74, both hemispheres 523.7
2190 Female, age 85, both hemispheres 496.2
2804 Female, age 91, both hemispheres 439.3
2044 Male, age 76, both hemispheres 427.5
Medial olivary nucleus
nTPM: 507.7
1962 Male, age 76, both hemispheres 584.6
2851 Male, age 80, both hemispheres 509.0
1943 Male, age 61, both hemispheres 480.3
2138 Female, age 91, both hemispheres 457.0
Medial vestibular nucleus
nTPM: 448.2
2624 Male, age 61, both hemispheres 528.3
2801 Male, age 74, both hemispheres 500.3
2093 Male, age 80, both hemispheres 479.8
2803 Female, age 91, both hemispheres 456.8
2134 Male, age 76, both hemispheres 377.8
2743 Female, age 85, both hemispheres 346.2
Motor hypoglossal nucleus
nTPM: 501.1
2182 Male, age 80, both hemispheres 665.5
2132 Female, age 85, both hemispheres 538.4
2125 Female, age 91, both hemispheres 501.7
2461 Male, age 61, both hemispheres 462.8
2277 Male, age 76, both hemispheres 337.0
Nucleus ambiguus
nTPM: 540.1
2071 Male, age 76, both hemispheres 575.1
2096 Female, age 85, both hemispheres 505.2
Nucleus cuneatus
nTPM: 532.3
2100 Male, age 76, both hemispheres 601.3
2805 Female, age 91, both hemispheres 600.7
2380 Male, age 80, both hemispheres 591.6
2381 Male, age 80, both hemispheres 547.4
2808 Female, age 85, both hemispheres 527.9
2564 Male, age 74, both hemispheres 520.2
2131 Male, age 76, both hemispheres 493.0
2562 Male, age 61, both hemispheres 468.2
2376 Male, age 61, both hemispheres 440.2
Nucleus gracilis
nTPM: 585.3
2382 Male, age 80, both hemispheres 644.0
2299 Female, age 85, both hemispheres 576.7
2627 Male, age 74, both hemispheres 535.1
Nucleus raphe obscurus
nTPM: 563.9
2142 Male, age 76, midline 633.3
2845 Female, age 85, midline 570.1
2800 Male, age 61, midline 488.4
Nucleus raphe pallidus
nTPM: 536.8
2145 Male, age 76, midline 687.3
2183 Male, age 80, midline 497.5
1924 Male, age 61, midline 425.7
Nucleus tractus solitarii
nTPM: 334.3
2191 Female, age 85, both hemispheres 383.8
2307 Male, age 80, both hemispheres 383.7
2656 Male, age 76, both hemispheres 339.2
2144 Female, age 91, right hemisphere 230.3
Parvicellular reticular nuclei
nTPM: 468.8
2095 Male, age 76, both hemispheres 530.3
2119 Male, age 80, both hemispheres 482.4
2558 Male, age 74, both hemispheres 393.7
Parvicellular reticular nuclei, medullary
nTPM: 431.9
2189 Female, age 91, both hemispheres 463.2
2181 Male, age 80, left hemisphere 432.7
2091 Female, age 85, both hemispheres 400.0
Peritrigeminal nucleus
nTPM: 466.2
2136 Male, age 76, both hemispheres 500.6
2067 Female, age 85, both hemispheres 454.4
2179 Male, age 61, both hemispheres 443.5
Prepositus hypoglossal nucleus
nTPM: 420.6
2855 Female, age 85, right hemisphere 456.9
2086 Male, age 80, both hemispheres 384.2
Spinal trigeminal nucleus, caudal
nTPM: 480.0
2308 Male, age 80, both hemispheres 536.3
2312 Male, age 61, both hemispheres 488.4
2447 Male, age 76, both hemispheres 471.7
2642 Male, age 74, both hemispheres 465.0
2390 Female, age 91, both hemispheres 438.7
Spinal trigeminal nucleus, interpolar
nTPM: 409.5
2389 Female, age 91, both hemispheres 451.0
2625 Male, age 61, both hemispheres 450.2
2033 Male, age 80, both hemispheres 419.9
2386 Female, age 85, both hemispheres 363.8
2066 Male, age 76, right hemisphere 362.6
Spinal vestibular nucleus
nTPM: 494.7
2384 Male, age 74, both hemispheres 615.1
2748 Male, age 76, both hemispheres 501.0
2806 Female, age 85, both hemispheres 489.0
2186 Female, age 91, both hemispheres 461.5
2780 Male, age 80, both hemispheres 457.5
2796 Male, age 61, both hemispheres 444.4
Superior vestibular nucleus
nTPM: 400.7
2015 Male, age 80, both hemispheres 436.1
2061 Male, age 76, both hemispheres 416.6
2383 Male, age 74, both hemispheres 349.4
Ventral medullary reticular nucleus
nTPM: 490.2
2372 Male, age 61, both hemispheres 496.2
2060 Male, age 76, both hemispheres 484.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 463.9
2118 Male, age 80, both hemispheres 527.0
2302 Female, age 91, both hemispheres 480.6
2180 Male, age 61, both hemispheres 466.3
1986 Male, age 76, both hemispheres 449.0
2741 Female, age 85, both hemispheres 396.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 215.4
FF:10155-103A2 76 years, female 241.0
FF:10174-103C3 60 years, female 216.2
FF:10038-101F2 18-64 years, mixed 188.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 167.3
Samples: 4

Max nTPM: 189.0
Min nTPM: 136.5
Sample A Female 189.0
Sample B Female 165.4
Sample C Male 178.2
Sample D Male 136.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 8.8
70300923 Antisense, RP_050607_02_G01, Mouse strain C57BL/6J (56 days, male) 8.8

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