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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:141.9 nTPM
HPA Brain:576.3 nTPM
GTEx:141.9 nTPM
FANTOM5:409.8 Scaled Tags Per Million
Pig:203.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

576.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 425.3
2565 Male, age 75, midline 479.4
2194 Female, age 79, both hemispheres 445.5
2816 Male, age 47, midline 422.0
1981 Female, age 72, midline 395.4
2048 Male, age 55, midline 383.9
Cervical spinal cord, dorsal horn
nTPM: 384.5
2296 Male, age 66, both hemispheres 505.7
2173 Female, age 72, unknown 479.3
2069 Male, age 47, both hemispheres 367.0
1877 Male, age 55, unknown 340.9
2721 Male, age 90, both hemispheres 326.9
2297 Male, age 75, both hemispheres 287.3
Cervical spinal cord, ventral horn
nTPM: 576.3
2480 Male, age 75, both hemispheres 767.1
2809 Male, age 90, both hemispheres 645.8
2295 Male, age 66, both hemispheres 624.3
2820 Female, age 79, both hemispheres 515.4
2068 Male, age 55, unknown 512.2
2098 Female, age 72, unknown 392.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 141.9
Samples: 159

Max nTPM: 344.7
Min nTPM: 52.5
Std nTPM: 49.9
Median nTPM: 134.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 344.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 323.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 293.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 288.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 283.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 243.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 233.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 230.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 223.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 223.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 220.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 217.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 213.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 212.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 209.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 209.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 204.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 203.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 203.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 196.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 194.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 193.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 191.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 187.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 181.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 180.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 180.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 177.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 177.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 177.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 176.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 176.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 174.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 173.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 172.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 172.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 171.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 168.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 168.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 167.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 167.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 164.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 162.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 161.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 159.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 158.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 158.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 157.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 157.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 156.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 156.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 155.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 152.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 152.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 149.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 147.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 145.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 145.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 144.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 143.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 142.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 142.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 141.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 141.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 141.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 141.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 140.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 139.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 139.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 139.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 138.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 138.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 137.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 135.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 135.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 134.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 133.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 131.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 131.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 131.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 130.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 129.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 128.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 128.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 128.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 127.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 127.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 126.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 125.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 125.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 124.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 124.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 124.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 123.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 122.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 121.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 117.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 116.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 115.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 115.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 114.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 114.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 114.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 114.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 114.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 113.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 111.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 111.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 111.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 111.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 111.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 111.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 111.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 107.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 107.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 107.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 105.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 105.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 104.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 102.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 102.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 101.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 101.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 94.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 92.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 92.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 92.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 91.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 91.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 88.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 88.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 87.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 87.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 86.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 84.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 79.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 76.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 68.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 68.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 67.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 63.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 52.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

409.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 409.8
FF:10181-103D1 60 years, female 531.6
FF:10159-103A6 76 years, female 288.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 179.6
Samples: 4

Max nTPM: 222.9
Min nTPM: 160.4
Sample A Female 169.7
Sample B Female 222.9
Sample C Male 160.4
Sample D Male 165.4
Ventral spinal cord
nTPM: 203.8
Samples: 4

Max nTPM: 226.8
Min nTPM: 179.6
Sample A Female 226.8
Sample B Female 221.6
Sample C Male 187.1
Sample D Male 179.6

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