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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:187.4 nTPM
HPA Brain:133.0 nTPM
GTEx:187.4 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:120.2 nTPM
Mouse:112.3 nTPM
Allen mouse:2.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.0
Sample id Sample description nTPM
Amygdala
nTPM: 133.0
2695 Female, age 67, right hemisphere 172.0
1987 Female, age 91, left hemisphere 135.2
2814 Male, age 76, right hemisphere 135.2
2514 Male, age 75, right hemisphere 120.1
2517 Female, age 94, left hemisphere 102.4
Basal amygdala
nTPM: 111.8
2827 Female, age 67, right hemisphere 141.0
2609 Male, age 75, right hemisphere 121.7
1955 Male, age 76, both hemispheres 110.7
2110 Male, age 80, left hemisphere 107.6
2243 Female, age 91, right hemisphere 100.7
2685 Female, age 94, left hemisphere 89.0
Central amygdala
nTPM: 113.8
2826 Female, age 94, left hemisphere 126.5
1905 Male, age 76, both hemispheres 117.0
2515 Male, age 75, right hemisphere 111.3
2239 Male, age 80, left hemisphere 107.3
2701 Female, age 91, right hemisphere 107.0
Corticomedial amygdala
nTPM: 103.5
2535 Female, age 67, right hemisphere 114.3
2242 Female, age 91, right hemisphere 109.4
2829 Male, age 80, left hemisphere 106.2
2428 Male, age 75, right hemisphere 100.8
2240 Male, age 76, both hemispheres 98.0
2429 Female, age 94, left hemisphere 92.3
Lateral amygdala
nTPM: 114.0
2830 Female, age 67, right hemisphere 146.1
2256 Male, age 80, left hemisphere 122.4
2516 Male, age 75, right hemisphere 114.9
1883 Male, age 76, both hemispheres 111.2
2534 Female, age 94, left hemisphere 99.3
2255 Female, age 91, right hemisphere 90.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 187.4
Samples: 152

Max nTPM: 497.2
Min nTPM: 86.4
Std nTPM: 61.8
Median nTPM: 175.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 497.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 410.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 348.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 347.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 347.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 319.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 310.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 309.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 298.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 279.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 274.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 274.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 269.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 267.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 260.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 257.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 253.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 251.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 250.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 249.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 249.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 241.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 240.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 239.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 239.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 238.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 237.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 236.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 236.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 235.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 235.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 234.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 229.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 228.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 227.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 220.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 217.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 215.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 215.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 212.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 210.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 207.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 203.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 203.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 203.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 202.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 198.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 198.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 198.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 197.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 196.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 196.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 194.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 190.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 190.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 190.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 189.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 187.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 187.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 186.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 186.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 184.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 183.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 182.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 181.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 180.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 179.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 179.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 179.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 178.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 175.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 175.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 175.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 174.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 174.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 172.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 172.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 172.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 171.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 171.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 170.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 170.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 169.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 167.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 166.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 165.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 165.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 164.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 164.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 164.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 163.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 162.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 160.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 159.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 158.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 157.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 157.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 157.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 156.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 153.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 151.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 151.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 149.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 148.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 146.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 145.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 144.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 144.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 143.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 142.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 139.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 139.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 138.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 135.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 133.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 133.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 129.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 129.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 127.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 126.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 126.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 123.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 122.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 122.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 122.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 118.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 118.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 116.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 115.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 114.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 108.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 102.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 101.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 100.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 86.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 23.5
FF:10151-102I7 76 years, female 23.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.2
Pig sample Sample description nTPM
Amygdala
nTPM: 120.2
Samples: 4

Max nTPM: 136.6
Min nTPM: 100.1
Sample A Female 131.4
Sample B Female 136.6
Sample C Male 112.8
Sample D Male 100.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 112.3
Samples: 4

Max nTPM: 128.0
Min nTPM: 97.7
Sample A Male 97.7
Sample B Male 110.9
Sample C Female 128.0
Sample D Female 112.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
743 Antisense, RP_Baylor_103125, Mouse strain C57BL/6J (56 days, male) 3.7
68341460 Antisense, RP_041207_01_F02, Mouse strain C57BL/6J (56 days, male) 1.3

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