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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:635.1 nTPM
HPA Brain:415.8 nTPM
GTEx:635.1 nTPM
FANTOM5:553.7 Scaled Tags Per Million
Pig:272.6 nTPM
Mouse:849.9 nTPM
Allen mouse:5.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

415.8
Sample id Sample description nTPM
Amygdala
nTPM: 408.0
1987 Female, age 91, left hemisphere 498.1
2514 Male, age 75, right hemisphere 458.6
2517 Female, age 94, left hemisphere 392.0
2814 Male, age 76, right hemisphere 356.7
2695 Female, age 67, right hemisphere 334.8
Basal amygdala
nTPM: 394.7
2110 Male, age 80, left hemisphere 540.1
2609 Male, age 75, right hemisphere 503.6
2243 Female, age 91, right hemisphere 449.4
2685 Female, age 94, left hemisphere 349.3
1955 Male, age 76, both hemispheres 326.0
2827 Female, age 67, right hemisphere 199.5
Central amygdala
nTPM: 391.3
2239 Male, age 80, left hemisphere 464.3
2515 Male, age 75, right hemisphere 445.9
2826 Female, age 94, left hemisphere 357.6
1905 Male, age 76, both hemispheres 346.5
2701 Female, age 91, right hemisphere 342.3
Corticomedial amygdala
nTPM: 415.8
2829 Male, age 80, left hemisphere 544.0
2242 Female, age 91, right hemisphere 503.2
2428 Male, age 75, right hemisphere 469.2
2429 Female, age 94, left hemisphere 432.5
2240 Male, age 76, both hemispheres 295.2
2535 Female, age 67, right hemisphere 250.6
Lateral amygdala
nTPM: 352.1
2516 Male, age 75, right hemisphere 455.7
1883 Male, age 76, both hemispheres 376.9
2534 Female, age 94, left hemisphere 370.9
2256 Male, age 80, left hemisphere 369.3
2255 Female, age 91, right hemisphere 351.5
2830 Female, age 67, right hemisphere 188.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

635.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 635.1
Samples: 152

Max nTPM: 1193.4
Min nTPM: 246.3
Std nTPM: 182.7
Median nTPM: 623.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1193.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1121.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1067.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1031.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1028.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1017.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1013.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 994.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 948.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 904.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 893.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 891.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 885.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 882.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 872.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 869.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 863.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 855.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 851.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 848.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 842.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 839.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 831.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 825.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 812.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 807.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 800.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 799.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 798.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 796.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 788.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 787.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 782.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 782.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 781.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 775.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 774.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 766.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 764.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 757.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 755.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 753.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 741.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 731.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 710.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 706.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 699.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 685.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 683.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 683.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 680.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 680.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 678.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 677.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 669.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 669.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 664.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 659.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 658.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 658.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 655.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 654.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 653.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 651.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 649.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 648.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 643.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 642.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 642.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 637.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 633.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 630.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 629.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 629.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 629.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 626.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 621.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 619.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 619.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 615.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 614.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 606.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 605.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 604.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 601.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 600.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 597.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 596.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 595.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 593.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 588.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 585.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 584.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 583.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 577.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 577.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 576.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 575.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 575.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 573.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 569.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 568.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 568.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 562.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 558.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 551.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 546.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 540.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 527.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 524.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 516.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 508.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 508.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 507.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 506.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 490.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 489.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 488.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 486.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 486.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 482.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 479.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 472.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 471.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 469.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 468.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 464.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 461.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 457.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 452.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 450.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 436.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 432.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 415.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 409.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 406.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 403.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 392.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 388.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 381.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 377.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 369.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 363.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 360.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 336.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 335.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 331.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 302.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 297.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 284.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 282.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 246.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

553.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 553.7
FF:10151-102I7 76 years, female 553.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.6
Pig sample Sample description nTPM
Amygdala
nTPM: 272.6
Samples: 4

Max nTPM: 331.6
Min nTPM: 234.5
Sample A Female 331.6
Sample B Female 243.1
Sample C Male 281.1
Sample D Male 234.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

849.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 849.9
Samples: 4

Max nTPM: 884.8
Min nTPM: 830.2
Sample A Male 884.8
Sample B Male 846.7
Sample C Female 830.2
Sample D Female 837.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.5
74822850 Antisense, RP_050921_03_C01, Mouse strain C57BL/6J (56 days, male) 5.5

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