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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:513.0 nTPM
FANTOM5:458.7 Scaled Tags Per Million
Pig:495.2 nTPM
Mouse:757.2 nTPM
Allen mouse:2.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

513.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 513.0
2396 Male, age 61, right hemisphere 842.0
2497 Male, age 66, unknown 356.7
2032 Female, age 42, unknown 340.3
Centromedial thalamic nucleus
nTPM: 304.9
2401 Male, age 76, right hemisphere 378.4
2279 Female, age 85, left hemisphere 231.3
Habenula
nTPM: 465.7
2276 Male, age 66, unknown 520.7
1957 Male, age 80, both hemispheres 472.6
2203 Male, age 61, left hemisphere 439.4
2252 Male, age 62, unknown 430.0
Lateral geniculate body
nTPM: 397.0
2106 Female, age 67, right hemisphere 470.0
2399 Male, age 61, left hemisphere 417.4
2035 Female, age 72, unknown 407.4
2857 Male, age 74, right hemisphere 404.4
2841 Male, age 80, both hemispheres 402.0
1953 Male, age 62, unknown 382.9
2659 Male, age 66, unknown 350.4
2575 Female, age 94, right hemisphere 341.7
Lateral thalamic nuclei
nTPM: 385.1
2573 Female, age 94, left hemisphere 453.0
2765 Female, age 67, both hemispheres 429.8
1903 Male, age 76, left hemisphere 422.1
2577 Male, age 74, both hemispheres 321.4
2661 Female, age 72, unknown 299.0
Medial dorsal thalamic nucleus
nTPM: 459.2
1971 Male, age 61, right hemisphere 756.4
2572 Female, age 94, right hemisphere 681.0
2498 Male, age 66, unknown 543.8
2026 Male, age 62, unknown 472.8
1810 Male, age 48, unknown 453.9
2576 Male, age 74, both hemispheres 433.5
2492 Male, age 75, right hemisphere 419.4
2402 Female, age 67, both hemispheres 405.0
1859 Male, age 76, both hemispheres 402.9
2039 Female, age 72, unknown 395.1
1930 Female, age 42, unknown 383.3
2283 Male, age 80, right hemisphere 376.9
2660 Female, age 72, unknown 245.1
Medial geniculate body
nTPM: 374.4
2650 Female, age 94, left hemisphere 448.3
2657 Male, age 74, right hemisphere 423.4
1811 Female, age 42, unknown 377.7
2049 Male, age 76, both hemispheres 370.2
2207 Male, age 80, right hemisphere 347.8
2217 Female, age 72, unknown 338.6
2571 Male, age 75, right hemisphere 314.7
Nucleus reuniens
nTPM: 362.1
2212 Female, age 67, left hemisphere 454.7
2205 Male, age 80, left hemisphere 396.0
2210 Female, age 85, left hemisphere 235.6
Nucleus rhomboideus
nTPM: 352.1
2206 Male, age 80, both hemispheres 433.5
2213 Female, age 67, left hemisphere 397.7
2280 Female, age 85, left hemisphere 224.9
Posterior thalamic nucleus
nTPM: 481.4
2649 Female, age 94, both hemispheres 708.7
2266 Male, age 76, right hemisphere 424.1
2655 Male, age 74, right hemisphere 408.7
2495 Female, age 67, right hemisphere 384.2
Pulvinar
nTPM: 395.4
1972 Male, age 62, unknown 453.7
2398 Male, age 61, left hemisphere 437.2
2724 Male, age 74, right hemisphere 432.9
1932 Male, age 80, right hemisphere 408.0
2499 Male, age 66, unknown 395.8
1929 Male, age 48, unknown 394.5
2214 Male, age 76, right hemisphere 390.6
1899 Female, age 42, unknown 379.8
2496 Female, age 67, right hemisphere 331.9
2582 Female, age 72, unknown 329.6
Subthalamic nucleus
nTPM: 380.1
2124 Male, age 62, unknown 448.2
2406 Female, age 72, unknown 430.6
2282 Male, age 61, both hemispheres 418.9
2056 Female, age 72, unknown 405.1
2779 Female, age 42, unknown 400.5
2275 Male, age 66, unknown 344.0
2216 Male, age 48, unknown 303.1
2658 Male, age 74, both hemispheres 290.5
Ventral posterolateral thalamic nucleus
nTPM: 367.2
2397 Male, age 61, right hemisphere 492.2
2740 Male, age 76, right hemisphere 452.9
2197 Male, age 80, both hemispheres 410.8
2570 Male, age 75, right hemisphere 343.4
2578 Male, age 74, both hemispheres 302.2
2581 Female, age 72, unknown 201.9
Ventral posteromedial thalamic nucleus
nTPM: 400.0
2202 Male, age 61, left hemisphere 516.3
2127 Male, age 76, right hemisphere 417.7
2758 Male, age 80, both hemispheres 372.1
2653 Male, age 74, both hemispheres 355.3
2281 Male, age 75, right hemisphere 338.8
Ventral thalamic nuclei
nTPM: 370.1
1845 Male, age 48, unknown 441.4
1860 Male, age 76, both hemispheres 422.3
2204 Male, age 80, both hemispheres 407.7
2291 Female, age 72, unknown 382.3
2285 Male, age 62, unknown 373.9
1912 Female, age 42, unknown 371.0
2580 Male, age 66, unknown 361.2
2652 Male, age 74, left hemisphere 286.2
2858 Female, age 72, unknown 284.6
Zona incerta
nTPM: 271.2
2208 Male, age 80, right hemisphere 357.6
2215 Male, age 66, unknown 289.1
2403 Male, age 62, unknown 265.7
2663 Female, age 72, unknown 227.3
2822 Male, age 74, right hemisphere 216.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

458.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 458.7
FF:10154-103A1 76 years, female 458.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

495.2
Pig sample Sample description nTPM
Thalamus
nTPM: 495.2
Samples: 4

Max nTPM: 560.2
Min nTPM: 394.6
Sample A Female 560.2
Sample B Female 394.6
Sample C Male 532.5
Sample D Male 493.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

757.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 757.3
Samples: 4

Max nTPM: 803.9
Min nTPM: 682.4
Sample A Male 682.4
Sample B Male 791.8
Sample C Female 750.9
Sample D Female 803.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.4
74822850 Antisense, RP_050921_03_C01, Mouse strain C57BL/6J (56 days, male) 2.4

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