MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:530.9 nTPM
HPA Brain:552.0 nTPM
GTEx:530.9 nTPM
FANTOM5:500.3 Scaled Tags Per Million
Pig:495.6 nTPM
Mouse:690.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 552.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 357.5
2411 Female, age 72, unknown 446.5
1870 Female, age 42, unknown 387.4
2586 Male, age 75, left hemisphere 384.8
1827 Male, age 72, unknown 372.9
2828 Female, age 72, unknown 363.8
2019 Male, age 18, unknown 337.2
1833 Male, age 53, unknown 332.7
2666 Male, age 74, left hemisphere 323.8
2219 Male, age 76, both hemispheres 322.6
1830 Male, age 51, unknown 303.0
Dorsal raphe nucleus
nTPM: 552.0
2298 Female, age 72, unknown 736.3
2047 Male, age 72, unknown 612.3
1828 Male, age 53, unknown 521.2
2016 Female, age 72, unknown 468.6
2750 Male, age 76, both hemispheres 421.3
Inferior colliculus
nTPM: 467.2
2097 Female, age 72, unknown 620.4
1890 Male, age 53, unknown 529.6
1848 Female, age 42, unknown 393.5
2849 Male, age 72, unknown 325.3
Median raphe nucleus
nTPM: 505.8
2220 Male, age 76, midline 505.8
Periaquaductal grey, anterior
nTPM: 411.3
1947 Male, age 18, unknown 437.7
1795 Male, age 51, unknown 432.0
2502 Female, age 75, unknown 364.1
Periaquaductal grey, dorsal
nTPM: 394.7
2850 Male, age 76, both hemispheres 467.3
1840 Male, age 53, unknown 405.7
2464 Female, age 72, unknown 362.6
1831 Male, age 72, unknown 343.2
Periaquaductal grey, lateral
nTPM: 408.1
2272 Male, age 74, both hemispheres 470.2
2140 Male, age 76, both hemispheres 395.6
2053 Male, age 18, unknown 358.6
Pretectal area
nTPM: 395.9
2667 Female, age 75, unknown 509.1
2273 Male, age 74, both hemispheres 507.5
2224 Female, age 72, unknown 482.7
1817 Female, age 42, unknown 418.4
1944 Female, age 72, unknown 408.6
1816 Male, age 51, unknown 388.8
2825 Male, age 18, unknown 369.4
2007 Male, age 72, unknown 367.0
2316 Male, age 76, right hemisphere 319.8
1815 Male, age 53, unknown 310.7
2407 Male, age 75, both hemispheres 273.1
Red nucleus
nTPM: 363.6
1821 Female, age 72, unknown 478.6
2725 Female, age 75, unknown 427.7
1954 Female, age 42, unknown 420.8
2227 Male, age 72, unknown 391.6
2769 Male, age 72, unknown 389.2
2503 Female, age 72, unknown 374.2
1865 Male, age 51, unknown 358.1
1904 Male, age 53, unknown 355.1
2823 Male, age 76, right hemisphere 336.0
2785 Male, age 18, unknown 334.1
2584 Male, age 75, left hemisphere 251.3
2588 Male, age 74, left hemisphere 247.1
Substantia nigra
nTPM: 456.4
1916 Female, age 42, unknown 686.6
1941 Male, age 53, unknown 543.0
2699 Male, age 18, unknown 500.9
1851 Male, age 51, unknown 499.3
2241 Male, age 72, unknown 499.2
1889 Female, age 72, unknown 442.2
2409 Female, age 72, unknown 378.3
2665 Male, age 74, both hemispheres 364.7
2590 Female, age 75, unknown 326.4
2583 Male, age 75, right hemisphere 323.3
Superior colliculus
nTPM: 346.1
2087 Female, age 72, unknown 393.4
2261 Male, age 18, unknown 383.6
1796 Male, age 53, unknown 374.4
1995 Male, age 72, unknown 364.3
1913 Female, age 42, unknown 355.8
2587 Male, age 74, left hemisphere 337.9
2668 Female, age 75, unknown 336.6
1839 Male, age 51, unknown 327.4
2664 Male, age 75, both hemispheres 305.4
1895 Male, age 76, right hemisphere 281.7
Ventral tegmental area
nTPM: 464.1
1915 Female, age 42, unknown 532.1
1942 Male, age 51, unknown 480.4
2410 Female, age 72, unknown 467.7
2223 Female, age 72, unknown 458.1
2218 Male, age 76, both hemispheres 444.8
2021 Male, age 53, unknown 401.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 530.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 530.9
Samples: 139

Max nTPM: 1253.5
Min nTPM: 244.0
Std nTPM: 161.6
Median nTPM: 511.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1253.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1055.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1050.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 936.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 918.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 823.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 812.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 805.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 758.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 747.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 746.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 500.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 500.3
FF:10158-103A5 76 years, female 500.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 495.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 473.3
Samples: 4

Max nTPM: 559.5
Min nTPM: 358.8
Sample A Female 559.5
Sample B Female 358.8
Sample C Male 488.9
Sample D Male 485.9
Midbrain
nTPM: 495.4
Samples: 4

Max nTPM: 716.4
Min nTPM: 377.3
Sample A Female 716.4
Sample B Female 448.4
Sample C Male 439.5
Sample D Male 377.3
Periaqueductal gray
nTPM: 376.9
Samples: 3

Max nTPM: 426.0
Min nTPM: 314.7
Sample B Female 389.9
Sample C Male 426.0
Sample D Male 314.7
Superior colliculi
nTPM: 495.6
Samples: 4

Max nTPM: 598.1
Min nTPM: 423.3
Sample A Female 598.1
Sample B Female 423.3
Sample C Male 499.2
Sample D Male 461.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 690.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 690.0
Samples: 4

Max nTPM: 727.4
Min nTPM: 650.7
Sample A Male 727.4
Sample B Male 663.3
Sample C Female 650.7
Sample D Female 718.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
74822850 Antisense, RP_050921_03_C01, Mouse strain C57BL/6J (56 days, male) 1.5

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