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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1198.3 nTPM
FANTOM5:2114.2 Scaled Tags Per Million
Pig:1715.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041264Antibody HPA041271Antibody CAB002621
Glial cells Not detectedNot detectedMedium
Neuronal cells LowNot detectedMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1198.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1198.3
Samples: 246

Max nTPM: 2364.5
Min nTPM: 526.3
Std nTPM: 313.6
Median nTPM: 1185.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2364.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2152.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2095.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1997.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1906.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1888.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1887.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1841.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1831.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1766.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1765.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1762.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1749.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1716.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1710.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1710.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1695.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1686.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1680.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1657.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1656.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1639.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1596.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1592.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1583.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1579.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1569.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1555.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1551.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1549.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1544.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1542.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1528.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1518.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1514.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1493.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1477.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1476.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1471.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1470.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1469.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1458.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1458.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1458.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1455.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1448.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1444.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1442.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1442.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1439.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1431.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1427.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1426.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1423.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1423.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1423.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1423.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1423.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1423.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1423.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1420.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1419.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1418.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1414.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1413.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1412.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1402.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1401.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1396.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1393.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1391.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1379.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1379.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1374.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1369.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1364.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1357.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1348.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1348.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1345.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1343.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1340.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1337.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1336.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1334.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1332.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1326.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1322.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1319.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1315.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1313.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1307.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1306.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1303.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1303.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1299.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1289.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1279.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1276.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1269.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1257.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1256.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1255.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1253.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1247.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1246.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1245.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1244.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1241.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1236.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1233.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1221.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1216.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1211.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1209.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1205.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1205.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1201.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1195.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1195.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1192.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1189.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1186.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1184.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1176.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1167.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1166.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1164.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1164.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1149.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1145.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1145.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1144.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1132.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1131.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1128.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1125.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1123.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1118.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1111.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1108.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1108.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1098.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1093.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1093.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1083.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1081.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1080.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1079.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1076.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1074.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1071.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1065.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1062.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1054.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1053.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1051.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1043.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1038.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1028.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1025.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1024.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1023.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1016.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1016.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1014.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1009.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1008.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1008.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1003.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 998.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 997.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 996.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 995.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 995.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 985.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 984.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 982.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 981.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 976.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 974.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 973.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 971.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 971.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 971.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 971.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 968.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 964.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 964.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 949.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 943.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 936.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 936.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 919.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 916.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 915.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 913.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 913.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 906.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 904.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 901.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 899.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 897.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 897.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 896.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 886.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 878.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 876.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 870.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 862.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 861.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 860.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 848.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 847.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 847.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 845.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 843.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 842.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 834.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 833.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 808.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 803.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 802.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 795.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 793.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 784.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 775.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 772.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 770.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 762.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 752.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 751.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 741.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 738.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 736.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 720.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 714.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 713.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 700.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 697.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 667.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 667.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 642.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 629.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 616.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 526.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2114.2
FF:10164-103B2 76 years, female 2114.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1715.6
Pig sample Sample description nTPM
Caudate
nTPM: 1715.6
Samples: 4

Max nTPM: 1953.8
Min nTPM: 1481.6
Sample A Female 1569.8
Sample B Female 1857.3
Sample C Male 1953.8
Sample D Male 1481.6

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