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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:582.9 nTPM
HPA Brain:664.4 nTPM
GTEx:582.9 nTPM
FANTOM5:1246.4 Scaled Tags Per Million
Pig:671.0 nTPM
Mouse:816.1 nTPM
Allen mouse:20.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

664.4
Sample id Sample description nTPM
Amygdala
nTPM: 664.4
2814 Male, age 76, right hemisphere 790.6
2514 Male, age 75, right hemisphere 701.2
1987 Female, age 91, left hemisphere 656.9
2695 Female, age 67, right hemisphere 589.8
2517 Female, age 94, left hemisphere 583.4
Basal amygdala
nTPM: 508.5
2609 Male, age 75, right hemisphere 614.3
2110 Male, age 80, left hemisphere 586.9
1955 Male, age 76, both hemispheres 515.9
2243 Female, age 91, right hemisphere 466.6
2827 Female, age 67, right hemisphere 439.3
2685 Female, age 94, left hemisphere 428.0
Central amygdala
nTPM: 582.0
1905 Male, age 76, both hemispheres 659.7
2515 Male, age 75, right hemisphere 648.8
2826 Female, age 94, left hemisphere 597.6
2239 Male, age 80, left hemisphere 533.9
2701 Female, age 91, right hemisphere 470.0
Corticomedial amygdala
nTPM: 491.6
2428 Male, age 75, right hemisphere 610.9
2829 Male, age 80, left hemisphere 578.0
2240 Male, age 76, both hemispheres 535.3
2429 Female, age 94, left hemisphere 452.5
2242 Female, age 91, right hemisphere 423.6
2535 Female, age 67, right hemisphere 349.4
Lateral amygdala
nTPM: 540.4
1883 Male, age 76, both hemispheres 709.7
2516 Male, age 75, right hemisphere 645.1
2534 Female, age 94, left hemisphere 551.8
2830 Female, age 67, right hemisphere 527.8
2256 Male, age 80, left hemisphere 455.4
2255 Female, age 91, right hemisphere 352.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 582.9
Samples: 152

Max nTPM: 4364.7
Min nTPM: 244.4
Std nTPM: 486.3
Median nTPM: 452.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4364.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2620.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2551.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2221.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1995.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1606.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1541.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1496.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1393.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1279.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1156.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1102.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 926.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 885.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 875.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 869.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 818.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 791.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 779.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 705.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 700.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 698.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 696.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 685.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 663.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 658.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 638.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 631.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 622.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 611.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 607.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 597.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 583.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 579.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 574.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 573.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 570.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 570.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 562.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 559.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 557.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 546.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 540.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 540.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 540.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 527.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 526.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 524.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 519.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 511.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 504.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 503.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 501.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 499.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 493.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 492.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 492.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 492.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 488.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 485.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 481.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 480.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 479.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 479.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 476.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 476.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 473.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 470.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 470.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 466.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 465.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 461.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 459.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 457.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 454.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 453.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 451.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 450.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 438.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 437.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 433.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 430.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 430.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 426.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 426.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 425.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 423.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 422.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 421.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 420.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 420.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 418.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 418.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 416.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 416.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 410.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 410.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 409.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 405.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 405.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 400.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 398.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 398.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 398.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 397.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 396.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 394.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 393.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 392.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 391.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 391.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 390.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 381.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 381.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 380.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 379.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 378.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 377.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 373.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 372.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 372.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 371.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 367.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 366.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 362.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 360.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 356.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 355.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 354.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 351.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 351.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 349.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 348.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 346.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 346.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 341.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 339.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 335.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 327.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 327.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 323.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 321.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 315.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 305.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 302.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 291.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 288.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 286.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 285.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 258.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 244.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 244.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1246.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1246.4
FF:10151-102I7 76 years, female 1246.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

671.0
Pig sample Sample description nTPM
Amygdala
nTPM: 671.0
Samples: 4

Max nTPM: 841.4
Min nTPM: 594.1
Sample A Female 841.4
Sample B Female 654.3
Sample C Male 594.3
Sample D Male 594.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

816.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 816.2
Samples: 4

Max nTPM: 895.7
Min nTPM: 777.6
Sample A Male 895.7
Sample B Male 778.0
Sample C Female 777.6
Sample D Female 813.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.5
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 20.5

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