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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:837.0 nTPM
FANTOM5:2114.0 Scaled Tags Per Million
Pig:1152.0 nTPM
Mouse:942.5 nTPM
Allen mouse:18.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

837.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 757.7
2396 Male, age 61, right hemisphere 834.5
2032 Female, age 42, unknown 803.7
2497 Male, age 66, unknown 635.0
Centromedial thalamic nucleus
nTPM: 578.1
2401 Male, age 76, right hemisphere 826.1
2279 Female, age 85, left hemisphere 330.2
Habenula
nTPM: 778.4
1957 Male, age 80, both hemispheres 1039.1
2203 Male, age 61, left hemisphere 861.5
2252 Male, age 62, unknown 647.3
2276 Male, age 66, unknown 565.7
Lateral geniculate body
nTPM: 837.0
2106 Female, age 67, right hemisphere 1071.9
1953 Male, age 62, unknown 1026.0
2575 Female, age 94, right hemisphere 919.3
2035 Female, age 72, unknown 912.1
2399 Male, age 61, left hemisphere 829.7
2841 Male, age 80, both hemispheres 716.9
2857 Male, age 74, right hemisphere 613.0
2659 Male, age 66, unknown 607.3
Lateral thalamic nuclei
nTPM: 743.9
2573 Female, age 94, left hemisphere 895.2
2765 Female, age 67, both hemispheres 871.5
1903 Male, age 76, left hemisphere 799.1
2577 Male, age 74, both hemispheres 630.8
2661 Female, age 72, unknown 523.0
Medial dorsal thalamic nucleus
nTPM: 738.3
2572 Female, age 94, right hemisphere 1110.6
2498 Male, age 66, unknown 834.4
2283 Male, age 80, right hemisphere 796.6
1859 Male, age 76, both hemispheres 788.2
2026 Male, age 62, unknown 783.8
1810 Male, age 48, unknown 755.6
1930 Female, age 42, unknown 739.7
2039 Female, age 72, unknown 719.2
1971 Male, age 61, right hemisphere 701.0
2402 Female, age 67, both hemispheres 652.3
2576 Male, age 74, both hemispheres 647.3
2492 Male, age 75, right hemisphere 577.6
2660 Female, age 72, unknown 492.2
Medial geniculate body
nTPM: 663.7
1811 Female, age 42, unknown 870.6
2650 Female, age 94, left hemisphere 795.1
2207 Male, age 80, right hemisphere 702.5
2657 Male, age 74, right hemisphere 603.9
2571 Male, age 75, right hemisphere 597.3
2217 Female, age 72, unknown 596.1
2049 Male, age 76, both hemispheres 480.4
Nucleus reuniens
nTPM: 655.4
2212 Female, age 67, left hemisphere 858.7
2205 Male, age 80, left hemisphere 607.5
2210 Female, age 85, left hemisphere 499.9
Nucleus rhomboideus
nTPM: 603.9
2206 Male, age 80, both hemispheres 826.0
2213 Female, age 67, left hemisphere 527.1
2280 Female, age 85, left hemisphere 458.7
Posterior thalamic nucleus
nTPM: 758.7
2649 Female, age 94, both hemispheres 1065.5
2266 Male, age 76, right hemisphere 824.1
2655 Male, age 74, right hemisphere 594.5
2495 Female, age 67, right hemisphere 550.5
Pulvinar
nTPM: 753.5
1972 Male, age 62, unknown 982.1
1932 Male, age 80, right hemisphere 864.3
2398 Male, age 61, left hemisphere 818.1
1929 Male, age 48, unknown 780.0
1899 Female, age 42, unknown 755.8
2214 Male, age 76, right hemisphere 748.2
2496 Female, age 67, right hemisphere 688.4
2724 Male, age 74, right hemisphere 658.7
2499 Male, age 66, unknown 641.6
2582 Female, age 72, unknown 598.0
Subthalamic nucleus
nTPM: 703.0
2406 Female, age 72, unknown 928.1
2275 Male, age 66, unknown 837.7
2282 Male, age 61, both hemispheres 791.2
2124 Male, age 62, unknown 732.7
2658 Male, age 74, both hemispheres 726.8
2779 Female, age 42, unknown 633.4
2056 Female, age 72, unknown 523.0
2216 Male, age 48, unknown 450.8
Ventral posterolateral thalamic nucleus
nTPM: 651.7
2397 Male, age 61, right hemisphere 799.4
2740 Male, age 76, right hemisphere 779.9
2197 Male, age 80, both hemispheres 755.1
2578 Male, age 74, both hemispheres 667.6
2570 Male, age 75, right hemisphere 535.3
2581 Female, age 72, unknown 372.7
Ventral posteromedial thalamic nucleus
nTPM: 668.6
2202 Male, age 61, left hemisphere 777.0
2653 Male, age 74, both hemispheres 714.2
2758 Male, age 80, both hemispheres 683.7
2127 Male, age 76, right hemisphere 627.0
2281 Male, age 75, right hemisphere 540.9
Ventral thalamic nuclei
nTPM: 698.7
1845 Male, age 48, unknown 957.4
1860 Male, age 76, both hemispheres 909.4
1912 Female, age 42, unknown 727.4
2580 Male, age 66, unknown 704.4
2285 Male, age 62, unknown 641.4
2204 Male, age 80, both hemispheres 638.5
2652 Male, age 74, left hemisphere 628.3
2291 Female, age 72, unknown 568.2
2858 Female, age 72, unknown 513.7
Zona incerta
nTPM: 642.4
2215 Male, age 66, unknown 836.3
2822 Male, age 74, right hemisphere 731.6
2208 Male, age 80, right hemisphere 626.3
2403 Male, age 62, unknown 555.7
2663 Female, age 72, unknown 462.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2114.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 2114.0
FF:10154-103A1 76 years, female 2114.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1152.0
Pig sample Sample description nTPM
Thalamus
nTPM: 1152.0
Samples: 4

Max nTPM: 1340.7
Min nTPM: 851.6
Sample A Female 1319.9
Sample B Female 851.6
Sample C Male 1095.7
Sample D Male 1340.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

942.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 942.5
Samples: 4

Max nTPM: 1023.8
Min nTPM: 855.1
Sample A Male 855.1
Sample B Male 1023.8
Sample C Female 887.9
Sample D Female 1003.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 18.6
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 18.6

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