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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:626.6 nTPM
HPA Brain:369.1 nTPM
GTEx:626.6 nTPM
FANTOM5:212.0 Scaled Tags Per Million
Pig:332.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

369.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 291.9
2565 Male, age 75, midline 380.0
1981 Female, age 72, midline 362.9
2816 Male, age 47, midline 251.1
2048 Male, age 55, midline 233.2
2194 Female, age 79, both hemispheres 232.2
Cervical spinal cord, dorsal horn
nTPM: 275.7
2173 Female, age 72, unknown 395.0
2296 Male, age 66, both hemispheres 310.1
2069 Male, age 47, both hemispheres 306.7
1877 Male, age 55, unknown 280.2
2297 Male, age 75, both hemispheres 194.8
2721 Male, age 90, both hemispheres 167.2
Cervical spinal cord, ventral horn
nTPM: 369.1
2480 Male, age 75, both hemispheres 539.7
2809 Male, age 90, both hemispheres 463.9
2098 Female, age 72, unknown 399.1
2295 Male, age 66, both hemispheres 318.3
2068 Male, age 55, unknown 306.6
2820 Female, age 79, both hemispheres 187.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

626.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 626.6
Samples: 159

Max nTPM: 1055.6
Min nTPM: 274.9
Std nTPM: 177.9
Median nTPM: 587.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1055.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1040.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1008.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1008.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1005.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 992.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 976.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 975.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 972.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 957.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 941.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 938.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 930.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 928.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 927.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 893.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 892.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 888.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 872.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 864.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 858.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 855.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 841.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 835.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 833.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 833.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 832.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 830.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 820.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 814.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 813.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 796.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 784.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 783.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 779.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 769.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 763.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 755.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 734.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 731.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 729.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 726.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 726.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 723.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 719.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 716.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 715.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 710.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 700.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 699.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 690.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 684.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 683.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 675.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 673.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 671.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 667.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 667.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 663.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 660.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 656.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 656.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 655.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 651.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 651.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 647.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 646.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 644.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 643.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 632.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 614.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 609.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 607.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 601.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 601.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 592.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 590.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 589.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 589.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 587.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 585.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 585.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 583.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 582.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 581.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 580.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 579.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 578.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 572.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 572.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 559.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 558.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 557.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 551.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 551.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 550.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 548.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 548.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 543.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 541.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 539.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 536.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 531.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 528.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 527.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 527.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 525.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 518.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 518.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 517.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 517.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 511.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 508.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 507.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 507.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 500.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 498.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 494.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 493.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 491.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 491.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 486.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 486.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 484.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 477.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 475.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 473.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 473.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 471.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 470.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 467.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 467.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 464.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 464.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 449.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 448.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 448.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 447.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 445.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 438.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 429.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 426.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 414.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 412.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 412.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 407.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 405.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 402.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 397.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 395.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 391.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 384.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 375.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 369.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 362.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 325.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 297.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 289.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 274.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

212.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 212.0
FF:10181-103D1 60 years, female 242.3
FF:10159-103A6 76 years, female 181.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 332.8
Samples: 4

Max nTPM: 519.2
Min nTPM: 206.5
Sample A Female 206.5
Sample B Female 355.7
Sample C Male 519.2
Sample D Male 249.7
Ventral spinal cord
nTPM: 296.3
Samples: 4

Max nTPM: 336.1
Min nTPM: 239.4
Sample A Female 239.4
Sample B Female 329.3
Sample C Male 336.1
Sample D Male 280.3

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