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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:338.9 nTPM
FANTOM5:259.6 Scaled Tags Per Million
Pig:223.9 nTPM
Mouse:492.5 nTPM
Allen mouse:5.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

338.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 225.2
2396 Male, age 61, right hemisphere 266.6
2032 Female, age 42, unknown 206.6
2497 Male, age 66, unknown 202.5
Centromedial thalamic nucleus
nTPM: 191.0
2279 Female, age 85, left hemisphere 210.4
2401 Male, age 76, right hemisphere 171.6
Habenula
nTPM: 187.3
1957 Male, age 80, both hemispheres 217.7
2252 Male, age 62, unknown 190.4
2276 Male, age 66, unknown 177.0
2203 Male, age 61, left hemisphere 164.3
Lateral geniculate body
nTPM: 210.5
2575 Female, age 94, right hemisphere 274.3
2857 Male, age 74, right hemisphere 236.5
2035 Female, age 72, unknown 226.9
2841 Male, age 80, both hemispheres 215.4
2659 Male, age 66, unknown 206.2
1953 Male, age 62, unknown 199.8
2399 Male, age 61, left hemisphere 164.6
2106 Female, age 67, right hemisphere 160.4
Lateral thalamic nuclei
nTPM: 230.3
2577 Male, age 74, both hemispheres 275.8
2573 Female, age 94, left hemisphere 268.7
2661 Female, age 72, unknown 231.6
2765 Female, age 67, both hemispheres 205.4
1903 Male, age 76, left hemisphere 169.8
Medial dorsal thalamic nucleus
nTPM: 232.8
2572 Female, age 94, right hemisphere 417.6
2492 Male, age 75, right hemisphere 260.1
2576 Male, age 74, both hemispheres 253.2
1810 Male, age 48, unknown 250.7
1930 Female, age 42, unknown 244.1
2039 Female, age 72, unknown 231.6
1971 Male, age 61, right hemisphere 209.2
1859 Male, age 76, both hemispheres 200.8
2026 Male, age 62, unknown 200.4
2660 Female, age 72, unknown 200.0
2402 Female, age 67, both hemispheres 195.8
2498 Male, age 66, unknown 192.1
2283 Male, age 80, right hemisphere 170.7
Medial geniculate body
nTPM: 254.6
2571 Male, age 75, right hemisphere 449.7
2650 Female, age 94, left hemisphere 261.6
2049 Male, age 76, both hemispheres 223.1
2657 Male, age 74, right hemisphere 218.0
2207 Male, age 80, right hemisphere 212.7
1811 Female, age 42, unknown 209.0
2217 Female, age 72, unknown 207.9
Nucleus reuniens
nTPM: 225.0
2205 Male, age 80, left hemisphere 245.9
2210 Female, age 85, left hemisphere 232.4
2212 Female, age 67, left hemisphere 196.8
Nucleus rhomboideus
nTPM: 197.5
2280 Female, age 85, left hemisphere 212.8
2213 Female, age 67, left hemisphere 192.8
2206 Male, age 80, both hemispheres 187.1
Posterior thalamic nucleus
nTPM: 338.9
2649 Female, age 94, both hemispheres 674.0
2655 Male, age 74, right hemisphere 295.1
2495 Female, age 67, right hemisphere 196.3
2266 Male, age 76, right hemisphere 190.2
Pulvinar
nTPM: 202.8
2499 Male, age 66, unknown 251.5
2496 Female, age 67, right hemisphere 221.9
1929 Male, age 48, unknown 216.4
1972 Male, age 62, unknown 213.0
2582 Female, age 72, unknown 204.6
1932 Male, age 80, right hemisphere 196.6
2724 Male, age 74, right hemisphere 181.7
1899 Female, age 42, unknown 181.2
2398 Male, age 61, left hemisphere 181.0
2214 Male, age 76, right hemisphere 179.7
Subthalamic nucleus
nTPM: 242.2
2658 Male, age 74, both hemispheres 285.5
2056 Female, age 72, unknown 285.1
2124 Male, age 62, unknown 282.1
2275 Male, age 66, unknown 236.6
2282 Male, age 61, both hemispheres 231.1
2779 Female, age 42, unknown 223.4
2406 Female, age 72, unknown 200.3
2216 Male, age 48, unknown 193.4
Ventral posterolateral thalamic nucleus
nTPM: 211.0
2578 Male, age 74, both hemispheres 263.4
2570 Male, age 75, right hemisphere 217.9
2197 Male, age 80, both hemispheres 204.7
2740 Male, age 76, right hemisphere 202.5
2397 Male, age 61, right hemisphere 192.0
2581 Female, age 72, unknown 185.3
Ventral posteromedial thalamic nucleus
nTPM: 211.6
2653 Male, age 74, both hemispheres 255.2
2281 Male, age 75, right hemisphere 229.8
2758 Male, age 80, both hemispheres 193.6
2127 Male, age 76, right hemisphere 190.5
2202 Male, age 61, left hemisphere 188.9
Ventral thalamic nuclei
nTPM: 223.2
2580 Male, age 66, unknown 264.4
2291 Female, age 72, unknown 247.5
1912 Female, age 42, unknown 232.1
1845 Male, age 48, unknown 231.8
2652 Male, age 74, left hemisphere 230.6
2285 Male, age 62, unknown 212.7
1860 Male, age 76, both hemispheres 203.4
2204 Male, age 80, both hemispheres 197.2
2858 Female, age 72, unknown 189.1
Zona incerta
nTPM: 221.2
2822 Male, age 74, right hemisphere 265.7
2215 Male, age 66, unknown 233.5
2403 Male, age 62, unknown 233.0
2663 Female, age 72, unknown 201.8
2208 Male, age 80, right hemisphere 172.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 259.6
FF:10154-103A1 76 years, female 259.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.9
Pig sample Sample description nTPM
Thalamus
nTPM: 223.9
Samples: 4

Max nTPM: 255.6
Min nTPM: 173.4
Sample A Female 243.3
Sample B Female 173.4
Sample C Male 223.3
Sample D Male 255.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

492.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 492.5
Samples: 4

Max nTPM: 551.8
Min nTPM: 424.2
Sample A Male 543.9
Sample B Male 450.2
Sample C Female 551.8
Sample D Female 424.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 5.0
77464982 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 5.0
77868800 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 1.5

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