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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:4555.7 nTPM
HPA Brain:2374.9 nTPM
GTEx:4555.7 nTPM
FANTOM5:1796.4 Scaled Tags Per Million
Pig:722.9 nTPM
Mouse:686.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2374.9
Sample id Sample description nTPM
Amygdala
nTPM: 2191.0
2514 Male, age 75, right hemisphere 2480.6
2695 Female, age 67, right hemisphere 2249.8
1987 Female, age 91, left hemisphere 2181.9
2517 Female, age 94, left hemisphere 2155.9
2814 Male, age 76, right hemisphere 1886.8
Basal amygdala
nTPM: 1924.8
2609 Male, age 75, right hemisphere 2476.1
2827 Female, age 67, right hemisphere 2016.1
2243 Female, age 91, right hemisphere 1944.6
2110 Male, age 80, left hemisphere 1927.6
1955 Male, age 76, both hemispheres 1631.1
2685 Female, age 94, left hemisphere 1553.4
Central amygdala
nTPM: 2374.9
2515 Male, age 75, right hemisphere 3619.4
2826 Female, age 94, left hemisphere 2785.1
2239 Male, age 80, left hemisphere 1955.1
1905 Male, age 76, both hemispheres 1824.3
2701 Female, age 91, right hemisphere 1690.7
Corticomedial amygdala
nTPM: 1959.5
2428 Male, age 75, right hemisphere 2988.7
2240 Male, age 76, both hemispheres 1897.5
2242 Female, age 91, right hemisphere 1809.9
2829 Male, age 80, left hemisphere 1805.7
2535 Female, age 67, right hemisphere 1768.7
2429 Female, age 94, left hemisphere 1486.3
Lateral amygdala
nTPM: 2162.3
2830 Female, age 67, right hemisphere 2647.0
2516 Male, age 75, right hemisphere 2454.9
2256 Male, age 80, left hemisphere 2442.5
2534 Female, age 94, left hemisphere 2068.7
2255 Female, age 91, right hemisphere 1772.6
1883 Male, age 76, both hemispheres 1588.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4555.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 4555.7
Samples: 152

Max nTPM: 14629.5
Min nTPM: 1706.6
Std nTPM: 1888.4
Median nTPM: 4178.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 14629.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 12652.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9111.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 9089.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 8653.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 8568.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8354.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 8292.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7898.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 7498.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 7289.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7049.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 6927.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 6917.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 6715.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6704.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6688.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6621.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6594.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6560.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 6460.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 6430.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6132.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6130.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 5969.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 5939.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 5788.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5784.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5677.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5634.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5608.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 5589.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 5558.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 5527.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 5507.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5497.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5376.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5298.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5269.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 5225.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 5223.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 5214.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5190.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 5148.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5138.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 5123.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 5109.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 5097.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 5080.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 5017.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4995.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 4969.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4954.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 4948.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4931.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 4904.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4903.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4889.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 4823.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 4740.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 4708.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 4649.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 4616.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4551.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 4482.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 4401.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4347.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4340.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 4335.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 4334.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 4296.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 4281.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 4278.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4277.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4233.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 4188.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4168.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 4166.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 4160.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4150.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 4080.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 4074.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 4052.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 4049.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 3991.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3990.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3989.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 3987.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 3976.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3913.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3883.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3877.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3861.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3853.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 3816.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3799.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3732.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3714.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 3628.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3628.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3584.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3574.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 3569.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 3533.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3532.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3517.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3427.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3406.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3348.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3346.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3334.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3319.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 3294.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3242.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3223.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 3187.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3181.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3161.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3150.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3109.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 3075.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2992.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2973.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2944.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2892.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2884.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2880.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2878.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2859.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2824.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2823.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2818.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2803.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2746.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2694.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2692.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2689.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2675.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2652.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2575.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2523.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2483.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2448.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2346.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 2321.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2279.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2230.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2169.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2056.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2040.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1939.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1706.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1796.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1796.4
FF:10151-102I7 76 years, female 1796.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

722.9
Pig sample Sample description nTPM
Amygdala
nTPM: 723.0
Samples: 4

Max nTPM: 851.7
Min nTPM: 462.0
Sample A Female 847.0
Sample B Female 851.7
Sample C Male 731.1
Sample D Male 462.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

686.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 686.1
Samples: 4

Max nTPM: 789.6
Min nTPM: 591.5
Sample A Male 591.5
Sample B Male 668.1
Sample C Female 789.6
Sample D Female 695.1

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