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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:3333.3 nTPM
FANTOM5:1699.6 Scaled Tags Per Million
Pig:2224.0 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3333.3
Sample id Sample description nTPM
Area postrema
nTPM: 3333.3
2799 Male, age 61, both hemispheres 5118.9
2306 Male, age 80, both hemispheres 3017.2
2054 Male, age 76, both hemispheres 1863.7
Dorsal medullary reticular nucleus
nTPM: 1824.7
2088 Male, age 76, both hemispheres 2066.6
2373 Male, age 61, both hemispheres 1751.8
2040 Female, age 85, both hemispheres 1655.6
Dorsal motor vagal complex
nTPM: 2216.6
2807 Female, age 85, both hemispheres 2834.6
2643 Male, age 74, both hemispheres 2805.4
2797 Male, age 61, both hemispheres 2385.7
2185 Male, age 76, both hemispheres 2284.0
2813 Female, age 72, unknown 1950.4
2000 Male, age 74, unknown 1888.7
2844 Male, age 55, unknown 1865.3
2133 Female, age 91, both hemispheres 1718.6
Gigantocellular reticular nuclei, medullary
nTPM: 1809.9
2314 Male, age 61, both hemispheres 2074.1
2310 Male, age 80, both hemispheres 1979.2
2387 Female, age 91, both hemispheres 1834.7
2022 Male, age 76, right hemisphere 1724.7
1876 Female, age 85, both hemispheres 1640.9
2462 Male, age 74, both hemispheres 1605.8
Gigantocellular reticular nuclei, pars
nTPM: 1694.0
2336 Male, age 61, both hemispheres 1806.9
2084 Female, age 85, both hemispheres 1802.8
2706 Male, age 80, both hemispheres 1795.7
2330 Male, age 80, both hemispheres 1765.9
2168 Male, age 76, both hemispheres 1298.5
Inferior olive
nTPM: 2477.5
2379 Male, age 80, both hemispheres 2756.4
2628 Female, age 91, both hemispheres 2595.5
2085 Female, age 85, both hemispheres 2385.4
2178 Male, age 61, both hemispheres 2345.2
2563 Male, age 74, both hemispheres 2305.1
Lateral medullary reticular nucleus
nTPM: 2478.6
2852 Male, age 80, both hemispheres 3262.0
2305 Male, age 74, both hemispheres 2572.0
2190 Female, age 85, both hemispheres 2517.4
2804 Female, age 91, both hemispheres 2463.1
2374 Male, age 61, both hemispheres 2151.1
2044 Male, age 76, both hemispheres 1906.3
Medial olivary nucleus
nTPM: 3098.4
1962 Male, age 76, both hemispheres 3739.1
1943 Male, age 61, both hemispheres 3158.5
2851 Male, age 80, both hemispheres 2988.1
2138 Female, age 91, both hemispheres 2507.9
Medial vestibular nucleus
nTPM: 1986.7
2624 Male, age 61, both hemispheres 2753.5
2801 Male, age 74, both hemispheres 2132.6
2093 Male, age 80, both hemispheres 1914.3
2803 Female, age 91, both hemispheres 1875.7
2743 Female, age 85, both hemispheres 1655.1
2134 Male, age 76, both hemispheres 1588.8
Motor hypoglossal nucleus
nTPM: 2036.3
2182 Male, age 80, both hemispheres 2891.9
2132 Female, age 85, both hemispheres 2167.6
2125 Female, age 91, both hemispheres 1939.1
2277 Male, age 76, both hemispheres 1713.6
2461 Male, age 61, both hemispheres 1469.4
Nucleus ambiguus
nTPM: 2579.7
2071 Male, age 76, both hemispheres 3100.2
2096 Female, age 85, both hemispheres 2059.2
Nucleus cuneatus
nTPM: 2429.4
2808 Female, age 85, both hemispheres 3534.7
2380 Male, age 80, both hemispheres 3083.2
2805 Female, age 91, both hemispheres 2591.0
2564 Male, age 74, both hemispheres 2473.7
2381 Male, age 80, both hemispheres 2459.5
2100 Male, age 76, both hemispheres 2098.5
2376 Male, age 61, both hemispheres 1919.2
2131 Male, age 76, both hemispheres 1890.7
2562 Male, age 61, both hemispheres 1814.0
Nucleus gracilis
nTPM: 3120.8
2299 Female, age 85, both hemispheres 3728.2
2382 Male, age 80, both hemispheres 2956.7
2627 Male, age 74, both hemispheres 2677.4
Nucleus raphe obscurus
nTPM: 2773.9
2142 Male, age 76, midline 3593.1
2845 Female, age 85, midline 2726.9
2800 Male, age 61, midline 2001.9
Nucleus raphe pallidus
nTPM: 3300.3
1924 Male, age 61, midline 3794.0
2145 Male, age 76, midline 3489.0
2183 Male, age 80, midline 2618.0
Nucleus tractus solitarii
nTPM: 1715.2
2191 Female, age 85, both hemispheres 2263.9
2307 Male, age 80, both hemispheres 1891.7
2656 Male, age 76, both hemispheres 1438.7
2144 Female, age 91, right hemisphere 1266.3
Parvicellular reticular nuclei
nTPM: 2113.3
2095 Male, age 76, both hemispheres 2386.9
2119 Male, age 80, both hemispheres 2383.7
2558 Male, age 74, both hemispheres 1569.4
Parvicellular reticular nuclei, medullary
nTPM: 1726.8
2091 Female, age 85, both hemispheres 1807.7
2181 Male, age 80, left hemisphere 1695.3
2189 Female, age 91, both hemispheres 1677.3
Peritrigeminal nucleus
nTPM: 2806.0
2067 Female, age 85, both hemispheres 3479.9
2136 Male, age 76, both hemispheres 2813.2
2179 Male, age 61, both hemispheres 2124.9
Prepositus hypoglossal nucleus
nTPM: 2107.4
2855 Female, age 85, right hemisphere 2149.9
2086 Male, age 80, both hemispheres 2065.0
Spinal trigeminal nucleus, caudal
nTPM: 2043.3
2308 Male, age 80, both hemispheres 2425.8
2642 Male, age 74, both hemispheres 2225.9
2447 Male, age 76, both hemispheres 1966.6
2312 Male, age 61, both hemispheres 1922.5
2390 Female, age 91, both hemispheres 1675.5
Spinal trigeminal nucleus, interpolar
nTPM: 1917.9
2625 Male, age 61, both hemispheres 2145.3
2033 Male, age 80, both hemispheres 2095.8
2386 Female, age 85, both hemispheres 1958.9
2066 Male, age 76, right hemisphere 1757.7
2389 Female, age 91, both hemispheres 1632.0
Spinal vestibular nucleus
nTPM: 2188.1
2796 Male, age 61, both hemispheres 2731.8
2384 Male, age 74, both hemispheres 2555.2
2806 Female, age 85, both hemispheres 2129.5
2780 Male, age 80, both hemispheres 2077.2
2748 Male, age 76, both hemispheres 2033.7
2186 Female, age 91, both hemispheres 1601.3
Superior vestibular nucleus
nTPM: 2133.3
2015 Male, age 80, both hemispheres 2270.4
2061 Male, age 76, both hemispheres 2112.0
2383 Male, age 74, both hemispheres 2017.4
Ventral medullary reticular nucleus
nTPM: 1964.9
2060 Male, age 76, both hemispheres 1985.1
2372 Male, age 61, both hemispheres 1944.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2400.8
2118 Male, age 80, both hemispheres 2826.7
2302 Female, age 91, both hemispheres 2492.3
1986 Male, age 76, both hemispheres 2487.8
2741 Female, age 85, both hemispheres 2134.9
2180 Male, age 61, both hemispheres 2062.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1699.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1699.6
FF:10038-101F2 18-64 years, mixed 2409.1
FF:10155-103A2 76 years, female 1362.6
FF:10174-103C3 60 years, female 1326.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2224.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2224.0
Samples: 4

Max nTPM: 3028.2
Min nTPM: 1558.3
Sample A Female 1879.9
Sample B Female 1558.3
Sample C Male 2429.6
Sample D Male 3028.2

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