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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:5989.2 nTPM
HPA Brain:3150.4 nTPM
GTEx:5989.2 nTPM
FANTOM5:2458.3 Scaled Tags Per Million
Pig:3240.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3150.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2342.6
1981 Female, age 72, midline 2866.3
2565 Male, age 75, midline 2523.3
2048 Male, age 55, midline 2185.6
2194 Female, age 79, both hemispheres 2085.8
2816 Male, age 47, midline 2052.0
Cervical spinal cord, dorsal horn
nTPM: 2229.4
2173 Female, age 72, unknown 3150.6
2069 Male, age 47, both hemispheres 2517.2
2296 Male, age 66, both hemispheres 2516.3
1877 Male, age 55, unknown 2296.4
2721 Male, age 90, both hemispheres 1594.9
2297 Male, age 75, both hemispheres 1300.8
Cervical spinal cord, ventral horn
nTPM: 3150.4
2098 Female, age 72, unknown 4359.0
2809 Male, age 90, both hemispheres 4194.2
2480 Male, age 75, both hemispheres 3214.1
2295 Male, age 66, both hemispheres 2905.1
2068 Male, age 55, unknown 2398.7
2820 Female, age 79, both hemispheres 1831.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5989.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 5989.2
Samples: 159

Max nTPM: 34718.8
Min nTPM: 1578.5
Std nTPM: 3100.7
Median nTPM: 5593.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 34718.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 12268.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 11757.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 11734.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 11655.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11169.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 10640.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 10348.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 9959.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 9681.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 9512.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 9211.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 9071.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 9021.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 8914.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 8908.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 8693.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 8641.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 8549.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 8532.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 8509.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 8410.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 7943.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 7912.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 7908.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 7892.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 7857.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 7764.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 7750.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 7675.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 7552.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 7499.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 7451.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 7422.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 7400.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 7257.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 7252.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 7142.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6883.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 6841.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 6786.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 6773.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 6633.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 6565.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 6562.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 6547.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 6518.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 6480.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 6469.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 6458.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 6374.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 6358.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6345.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 6296.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 6271.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 6252.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 6139.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 6130.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 6083.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 6075.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 6059.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 6048.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6019.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 5971.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5920.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 5864.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 5837.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 5808.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 5802.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 5791.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 5786.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 5785.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 5784.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 5778.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 5711.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 5695.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5658.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 5608.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5599.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 5593.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 5583.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5574.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 5556.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 5510.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 5509.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 5507.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5424.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 5419.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 5415.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 5401.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 5400.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 5295.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 5293.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 5272.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 5251.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 5244.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 5129.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 5101.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 5018.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4978.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 4953.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 4929.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4877.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 4790.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4719.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 4719.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 4706.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4684.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 4665.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 4663.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 4634.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 4591.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 4587.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 4572.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 4504.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4442.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4411.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 4394.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 4341.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 4306.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 4267.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 4216.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4179.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 4167.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 4154.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 4090.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 4076.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 4064.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 4036.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3999.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3974.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 3914.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 3797.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3759.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3729.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3635.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3625.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 3596.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3587.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3533.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3519.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 3409.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3406.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3309.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 3300.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3245.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 3225.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 3155.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 3127.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3098.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 3001.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2860.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2667.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2657.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2561.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2423.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2314.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2067.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1578.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2458.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2458.3
FF:10181-103D1 60 years, female 2909.7
FF:10159-103A6 76 years, female 2006.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3240.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2980.8
Samples: 4

Max nTPM: 4232.8
Min nTPM: 2269.3
Sample A Female 2336.8
Sample B Female 3084.1
Sample C Male 4232.8
Sample D Male 2269.3
Ventral spinal cord
nTPM: 3240.7
Samples: 4

Max nTPM: 3443.8
Min nTPM: 2980.0
Sample A Female 2980.0
Sample B Female 3234.5
Sample C Male 3304.6
Sample D Male 3443.8

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