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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:4115.5 nTPM
HPA Brain:1581.1 nTPM
GTEx:4115.5 nTPM
FANTOM5:903.9 Scaled Tags Per Million
Pig:1787.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1581.1
Sample id Sample description nTPM
Amygdala
nTPM: 1581.1
2514 Male, age 75, right hemisphere 2058.1
2695 Female, age 67, right hemisphere 1532.0
2814 Male, age 76, right hemisphere 1484.4
2517 Female, age 94, left hemisphere 1456.7
1987 Female, age 91, left hemisphere 1374.2
Basal amygdala
nTPM: 1350.8
2609 Male, age 75, right hemisphere 2465.7
2110 Male, age 80, left hemisphere 1510.4
1955 Male, age 76, both hemispheres 1297.8
2243 Female, age 91, right hemisphere 1161.2
2685 Female, age 94, left hemisphere 958.1
2827 Female, age 67, right hemisphere 711.6
Central amygdala
nTPM: 1488.3
2515 Male, age 75, right hemisphere 1967.6
1905 Male, age 76, both hemispheres 1624.2
2826 Female, age 94, left hemisphere 1512.6
2239 Male, age 80, left hemisphere 1345.6
2701 Female, age 91, right hemisphere 991.5
Corticomedial amygdala
nTPM: 1386.2
2428 Male, age 75, right hemisphere 2317.7
2829 Male, age 80, left hemisphere 1697.5
2429 Female, age 94, left hemisphere 1307.4
2242 Female, age 91, right hemisphere 1069.4
2240 Male, age 76, both hemispheres 1056.4
2535 Female, age 67, right hemisphere 868.6
Lateral amygdala
nTPM: 1359.2
2516 Male, age 75, right hemisphere 2369.9
2256 Male, age 80, left hemisphere 1454.9
1883 Male, age 76, both hemispheres 1294.7
2534 Female, age 94, left hemisphere 1288.9
2255 Female, age 91, right hemisphere 1096.1
2830 Female, age 67, right hemisphere 650.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4115.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 4115.5
Samples: 152

Max nTPM: 13298.6
Min nTPM: 181.2
Std nTPM: 1998.6
Median nTPM: 3708.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 13298.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 11786.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 11502.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 10693.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 10430.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9554.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 7341.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 7253.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6747.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6628.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6472.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 6356.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 6327.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 6291.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 6192.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6049.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 6009.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5910.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 5867.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5867.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 5859.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 5782.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5693.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 5687.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5674.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 5659.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 5580.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 5503.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5499.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 5306.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 5285.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5198.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 5150.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 5079.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 5043.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 4999.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 4945.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4872.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 4836.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4825.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 4820.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4818.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 4795.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 4740.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4727.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 4721.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 4719.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 4614.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 4603.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 4595.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 4586.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 4530.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 4528.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 4526.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4482.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 4443.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 4432.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 4424.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4374.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 4371.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 4256.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4213.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 4184.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4148.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 4129.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 4121.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 4104.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 4056.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3953.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 3855.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 3842.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3818.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3757.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3755.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 3727.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 3723.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3693.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3688.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 3650.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3650.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3649.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 3648.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3640.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3554.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3495.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3493.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3420.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3414.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3413.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 3411.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3393.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3361.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3359.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 3359.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3300.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3243.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3218.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3203.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3180.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 3161.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3159.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3128.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3124.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 3110.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3080.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3078.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3065.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3030.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2992.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2894.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2890.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2883.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2882.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2845.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2817.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2791.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2790.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2786.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2743.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2731.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2653.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2647.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2617.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2563.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2541.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2501.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2486.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2435.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2419.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2401.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2332.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2267.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2246.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2237.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2210.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2177.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2099.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2096.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2080.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2035.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1962.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1927.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1873.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1848.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1798.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1720.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1679.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1636.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1394.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1254.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1225.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 181.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

903.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 903.9
FF:10151-102I7 76 years, female 903.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1787.8
Pig sample Sample description nTPM
Amygdala
nTPM: 1787.8
Samples: 4

Max nTPM: 2545.7
Min nTPM: 1135.6
Sample A Female 2545.7
Sample B Female 1661.1
Sample C Male 1808.8
Sample D Male 1135.6

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