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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2059.0 nTPM
FANTOM5:795.6 Scaled Tags Per Million
Pig:1686.2 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2059.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 913.7
2497 Male, age 66, unknown 1205.4
2032 Female, age 42, unknown 1165.3
2396 Male, age 61, right hemisphere 370.5
Centromedial thalamic nucleus
nTPM: 1334.2
2401 Male, age 76, right hemisphere 1545.6
2279 Female, age 85, left hemisphere 1122.8
Habenula
nTPM: 1347.0
2203 Male, age 61, left hemisphere 1546.1
1957 Male, age 80, both hemispheres 1444.9
2252 Male, age 62, unknown 1267.8
2276 Male, age 66, unknown 1129.3
Lateral geniculate body
nTPM: 1585.9
2857 Male, age 74, right hemisphere 2198.4
2399 Male, age 61, left hemisphere 1933.1
2575 Female, age 94, right hemisphere 1662.7
2035 Female, age 72, unknown 1554.1
2106 Female, age 67, right hemisphere 1481.4
2659 Male, age 66, unknown 1388.8
2841 Male, age 80, both hemispheres 1280.3
1953 Male, age 62, unknown 1188.4
Lateral thalamic nuclei
nTPM: 1524.9
2573 Female, age 94, left hemisphere 2207.9
2661 Female, age 72, unknown 1563.0
1903 Male, age 76, left hemisphere 1419.2
2765 Female, age 67, both hemispheres 1380.8
2577 Male, age 74, both hemispheres 1053.8
Medial dorsal thalamic nucleus
nTPM: 1554.1
2572 Female, age 94, right hemisphere 3374.3
1810 Male, age 48, unknown 1697.9
1859 Male, age 76, both hemispheres 1656.3
2492 Male, age 75, right hemisphere 1631.6
2283 Male, age 80, right hemisphere 1556.1
2576 Male, age 74, both hemispheres 1525.1
2498 Male, age 66, unknown 1426.2
2026 Male, age 62, unknown 1368.5
1971 Male, age 61, right hemisphere 1249.0
2402 Female, age 67, both hemispheres 1239.8
1930 Female, age 42, unknown 1181.7
2660 Female, age 72, unknown 1172.0
2039 Female, age 72, unknown 1124.4
Medial geniculate body
nTPM: 1583.1
2650 Female, age 94, left hemisphere 2393.6
2657 Male, age 74, right hemisphere 1768.0
1811 Female, age 42, unknown 1555.3
2571 Male, age 75, right hemisphere 1461.4
2207 Male, age 80, right hemisphere 1403.1
2217 Female, age 72, unknown 1359.2
2049 Male, age 76, both hemispheres 1140.9
Nucleus reuniens
nTPM: 1052.0
2205 Male, age 80, left hemisphere 1229.3
2212 Female, age 67, left hemisphere 1045.0
2210 Female, age 85, left hemisphere 881.8
Nucleus rhomboideus
nTPM: 1054.3
2206 Male, age 80, both hemispheres 1448.2
2213 Female, age 67, left hemisphere 876.6
2280 Female, age 85, left hemisphere 838.1
Posterior thalamic nucleus
nTPM: 2059.0
2649 Female, age 94, both hemispheres 3041.9
2655 Male, age 74, right hemisphere 2106.5
2266 Male, age 76, right hemisphere 1867.5
2495 Female, age 67, right hemisphere 1220.0
Pulvinar
nTPM: 1607.9
1932 Male, age 80, right hemisphere 2021.5
2398 Male, age 61, left hemisphere 1967.2
2724 Male, age 74, right hemisphere 1703.0
2499 Male, age 66, unknown 1698.0
1929 Male, age 48, unknown 1567.2
2582 Female, age 72, unknown 1522.4
2214 Male, age 76, right hemisphere 1458.8
2496 Female, age 67, right hemisphere 1432.6
1899 Female, age 42, unknown 1416.8
1972 Male, age 62, unknown 1291.9
Subthalamic nucleus
nTPM: 1105.5
2282 Male, age 61, both hemispheres 1777.2
2124 Male, age 62, unknown 1300.7
2056 Female, age 72, unknown 1190.4
2275 Male, age 66, unknown 1074.5
2216 Male, age 48, unknown 1026.5
2406 Female, age 72, unknown 921.1
2779 Female, age 42, unknown 886.3
2658 Male, age 74, both hemispheres 667.0
Ventral posterolateral thalamic nucleus
nTPM: 1541.0
2197 Male, age 80, both hemispheres 1909.2
2740 Male, age 76, right hemisphere 1790.0
2397 Male, age 61, right hemisphere 1603.2
2570 Male, age 75, right hemisphere 1565.8
2581 Female, age 72, unknown 1334.7
2578 Male, age 74, both hemispheres 1042.8
Ventral posteromedial thalamic nucleus
nTPM: 1641.7
2758 Male, age 80, both hemispheres 1920.8
2281 Male, age 75, right hemisphere 1908.3
2127 Male, age 76, right hemisphere 1663.9
2202 Male, age 61, left hemisphere 1612.7
2653 Male, age 74, both hemispheres 1102.9
Ventral thalamic nuclei
nTPM: 1389.7
1860 Male, age 76, both hemispheres 1706.7
2858 Female, age 72, unknown 1624.2
2285 Male, age 62, unknown 1471.3
2580 Male, age 66, unknown 1450.8
2204 Male, age 80, both hemispheres 1391.3
2291 Female, age 72, unknown 1324.0
1912 Female, age 42, unknown 1275.5
1845 Male, age 48, unknown 1268.8
2652 Male, age 74, left hemisphere 995.1
Zona incerta
nTPM: 879.7
2208 Male, age 80, right hemisphere 1259.2
2403 Male, age 62, unknown 840.3
2215 Male, age 66, unknown 830.0
2663 Female, age 72, unknown 787.8
2822 Male, age 74, right hemisphere 681.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

795.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 795.6
FF:10154-103A1 76 years, female 795.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1686.2
Pig sample Sample description nTPM
Thalamus
nTPM: 1686.2
Samples: 4

Max nTPM: 2392.2
Min nTPM: 1088.5
Sample A Female 2392.2
Sample B Female 1155.8
Sample C Male 2108.3
Sample D Male 1088.5

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