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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:430.3 nTPM
HPA Brain:269.9 nTPM
GTEx:430.3 nTPM
FANTOM5:28.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.9
Sample id Sample description nTPM
Amygdala
nTPM: 267.9
2695 Female, age 67, right hemisphere 313.0
2514 Male, age 75, right hemisphere 273.4
2517 Female, age 94, left hemisphere 268.6
1987 Female, age 91, left hemisphere 264.9
2814 Male, age 76, right hemisphere 219.6
Basal amygdala
nTPM: 247.0
2827 Female, age 67, right hemisphere 317.8
2609 Male, age 75, right hemisphere 276.8
2110 Male, age 80, left hemisphere 244.4
2685 Female, age 94, left hemisphere 224.1
2243 Female, age 91, right hemisphere 218.4
1955 Male, age 76, both hemispheres 200.6
Central amygdala
nTPM: 268.2
2826 Female, age 94, left hemisphere 384.6
2515 Male, age 75, right hemisphere 321.8
2239 Male, age 80, left hemisphere 231.6
1905 Male, age 76, both hemispheres 207.2
2701 Female, age 91, right hemisphere 195.7
Corticomedial amygdala
nTPM: 240.5
2428 Male, age 75, right hemisphere 319.8
2535 Female, age 67, right hemisphere 257.7
2242 Female, age 91, right hemisphere 240.0
2829 Male, age 80, left hemisphere 230.0
2240 Male, age 76, both hemispheres 209.5
2429 Female, age 94, left hemisphere 185.7
Lateral amygdala
nTPM: 269.9
2830 Female, age 67, right hemisphere 381.2
2534 Female, age 94, left hemisphere 279.0
2256 Male, age 80, left hemisphere 269.9
2516 Male, age 75, right hemisphere 266.5
2255 Female, age 91, right hemisphere 215.3
1883 Male, age 76, both hemispheres 207.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 430.3
Samples: 152

Max nTPM: 900.9
Min nTPM: 196.6
Std nTPM: 122.7
Median nTPM: 398.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 900.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 874.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 834.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 796.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 739.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 712.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 705.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 684.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 668.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 664.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 654.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 644.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 639.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 636.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 622.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 611.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 606.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 580.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 570.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 562.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 559.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 536.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 533.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 530.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 526.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 518.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 518.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 515.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 508.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 507.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 498.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 496.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 478.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 476.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 476.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 473.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 471.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 466.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 465.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 465.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 463.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 461.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 461.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 460.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 458.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 457.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 454.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 453.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 452.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 438.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 437.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 435.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 432.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 431.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 431.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 429.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 429.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 428.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 425.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 422.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 422.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 422.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 421.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 418.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 418.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 416.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 413.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 413.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 410.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 410.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 408.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 405.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 402.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 401.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 398.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 398.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 398.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 396.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 396.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 395.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 395.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 394.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 390.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 390.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 390.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 388.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 385.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 384.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 383.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 382.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 382.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 381.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 380.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 378.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 375.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 375.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 372.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 368.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 368.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 367.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 367.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 366.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 366.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 366.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 365.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 364.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 363.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 363.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 362.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 360.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 358.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 357.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 355.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 354.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 354.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 354.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 351.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 351.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 350.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 347.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 346.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 346.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 345.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 344.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 341.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 340.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 334.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 334.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 331.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 327.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 327.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 323.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 322.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 317.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 315.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 314.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 314.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 313.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 311.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 310.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 307.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 306.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 295.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 293.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 279.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 279.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 273.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 264.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 264.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 258.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 250.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 196.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 28.0
FF:10151-102I7 76 years, female 28.0

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