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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:368.0 nTPM
FANTOM5:26.3 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

368.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 368.0
2396 Male, age 61, right hemisphere 683.4
2497 Male, age 66, unknown 215.2
2032 Female, age 42, unknown 205.3
Centromedial thalamic nucleus
nTPM: 245.0
2279 Female, age 85, left hemisphere 297.7
2401 Male, age 76, right hemisphere 192.2
Habenula
nTPM: 211.0
1957 Male, age 80, both hemispheres 234.3
2252 Male, age 62, unknown 213.4
2276 Male, age 66, unknown 210.7
2203 Male, age 61, left hemisphere 185.5
Lateral geniculate body
nTPM: 218.1
2575 Female, age 94, right hemisphere 274.6
2857 Male, age 74, right hemisphere 255.1
2659 Male, age 66, unknown 243.0
2035 Female, age 72, unknown 228.6
2841 Male, age 80, both hemispheres 227.8
1953 Male, age 62, unknown 207.1
2399 Male, age 61, left hemisphere 169.0
2106 Female, age 67, right hemisphere 139.9
Lateral thalamic nuclei
nTPM: 232.2
2577 Male, age 74, both hemispheres 282.2
2573 Female, age 94, left hemisphere 252.3
2661 Female, age 72, unknown 243.2
2765 Female, age 67, both hemispheres 200.4
1903 Male, age 76, left hemisphere 182.9
Medial dorsal thalamic nucleus
nTPM: 258.9
2572 Female, age 94, right hemisphere 432.7
1971 Male, age 61, right hemisphere 372.0
2492 Male, age 75, right hemisphere 281.4
1930 Female, age 42, unknown 269.3
1810 Male, age 48, unknown 260.8
2039 Female, age 72, unknown 249.0
2576 Male, age 74, both hemispheres 242.1
2498 Male, age 66, unknown 224.6
2402 Female, age 67, both hemispheres 221.1
2660 Female, age 72, unknown 212.4
1859 Male, age 76, both hemispheres 211.5
2026 Male, age 62, unknown 197.3
2283 Male, age 80, right hemisphere 191.7
Medial geniculate body
nTPM: 265.7
2571 Male, age 75, right hemisphere 438.4
2650 Female, age 94, left hemisphere 271.1
2049 Male, age 76, both hemispheres 250.2
2207 Male, age 80, right hemisphere 228.6
2217 Female, age 72, unknown 228.6
1811 Female, age 42, unknown 222.1
2657 Male, age 74, right hemisphere 221.2
Nucleus reuniens
nTPM: 237.0
2205 Male, age 80, left hemisphere 260.9
2210 Female, age 85, left hemisphere 241.8
2212 Female, age 67, left hemisphere 208.3
Nucleus rhomboideus
nTPM: 235.4
2213 Female, age 67, left hemisphere 256.0
2280 Female, age 85, left hemisphere 247.7
2206 Male, age 80, both hemispheres 202.5
Posterior thalamic nucleus
nTPM: 318.6
2649 Female, age 94, both hemispheres 527.4
2655 Male, age 74, right hemisphere 296.7
2495 Female, age 67, right hemisphere 228.0
2266 Male, age 76, right hemisphere 222.2
Pulvinar
nTPM: 215.1
2499 Male, age 66, unknown 294.5
1929 Male, age 48, unknown 230.5
1972 Male, age 62, unknown 222.0
2582 Female, age 72, unknown 212.8
2496 Female, age 67, right hemisphere 212.0
2724 Male, age 74, right hemisphere 207.8
2214 Male, age 76, right hemisphere 205.4
1899 Female, age 42, unknown 195.6
1932 Male, age 80, right hemisphere 185.2
2398 Male, age 61, left hemisphere 184.9
Subthalamic nucleus
nTPM: 255.6
2056 Female, age 72, unknown 303.9
2124 Male, age 62, unknown 302.3
2658 Male, age 74, both hemispheres 289.8
2275 Male, age 66, unknown 242.8
2779 Female, age 42, unknown 238.1
2216 Male, age 48, unknown 233.2
2406 Female, age 72, unknown 224.1
2282 Male, age 61, both hemispheres 210.3
Ventral posterolateral thalamic nucleus
nTPM: 240.8
2397 Male, age 61, right hemisphere 303.0
2578 Male, age 74, both hemispheres 270.2
2197 Male, age 80, both hemispheres 226.7
2570 Male, age 75, right hemisphere 219.4
2581 Female, age 72, unknown 215.0
2740 Male, age 76, right hemisphere 210.4
Ventral posteromedial thalamic nucleus
nTPM: 233.5
2202 Male, age 61, left hemisphere 258.2
2653 Male, age 74, both hemispheres 243.1
2281 Male, age 75, right hemisphere 235.5
2127 Male, age 76, right hemisphere 218.4
2758 Male, age 80, both hemispheres 212.3
Ventral thalamic nuclei
nTPM: 240.0
2291 Female, age 72, unknown 287.7
2580 Male, age 66, unknown 277.2
2652 Male, age 74, left hemisphere 245.4
1912 Female, age 42, unknown 242.3
1845 Male, age 48, unknown 231.4
2285 Male, age 62, unknown 230.1
1860 Male, age 76, both hemispheres 220.4
2204 Male, age 80, both hemispheres 216.2
2858 Female, age 72, unknown 209.3
Zona incerta
nTPM: 246.0
2403 Male, age 62, unknown 288.1
2822 Male, age 74, right hemisphere 271.5
2215 Male, age 66, unknown 232.2
2663 Female, age 72, unknown 229.0
2208 Male, age 80, right hemisphere 209.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 26.3
FF:10154-103A1 76 years, female 26.3

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