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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:752.9 nTPM
HPA Brain:649.9 nTPM
GTEx:752.9 nTPM
FANTOM5:498.3 Scaled Tags Per Million
Mouse:0.3 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

649.9
Sample id Sample description nTPM
Amygdala
nTPM: 649.9
2814 Male, age 76, right hemisphere 822.1
2514 Male, age 75, right hemisphere 640.0
2695 Female, age 67, right hemisphere 618.5
1987 Female, age 91, left hemisphere 618.1
2517 Female, age 94, left hemisphere 550.6
Basal amygdala
nTPM: 496.9
2609 Male, age 75, right hemisphere 594.3
1955 Male, age 76, both hemispheres 590.0
2110 Male, age 80, left hemisphere 528.2
2243 Female, age 91, right hemisphere 469.4
2685 Female, age 94, left hemisphere 462.0
2827 Female, age 67, right hemisphere 337.5
Central amygdala
nTPM: 590.9
1905 Male, age 76, both hemispheres 787.6
2515 Male, age 75, right hemisphere 619.1
2826 Female, age 94, left hemisphere 603.9
2239 Male, age 80, left hemisphere 514.4
2701 Female, age 91, right hemisphere 429.5
Corticomedial amygdala
nTPM: 500.7
2428 Male, age 75, right hemisphere 600.5
2829 Male, age 80, left hemisphere 573.0
2240 Male, age 76, both hemispheres 516.8
2429 Female, age 94, left hemisphere 481.5
2242 Female, age 91, right hemisphere 478.0
2535 Female, age 67, right hemisphere 354.4
Lateral amygdala
nTPM: 540.0
1883 Male, age 76, both hemispheres 711.5
2516 Male, age 75, right hemisphere 666.5
2534 Female, age 94, left hemisphere 594.1
2255 Female, age 91, right hemisphere 458.4
2256 Male, age 80, left hemisphere 425.2
2830 Female, age 67, right hemisphere 384.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

752.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 752.9
Samples: 152

Max nTPM: 1693.2
Min nTPM: 87.7
Std nTPM: 222.7
Median nTPM: 727.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1693.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1623.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1437.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1400.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1325.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1238.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1187.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1155.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1086.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1074.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1069.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1039.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1037.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1005.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 991.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 984.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 977.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 949.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 949.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 945.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 929.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 929.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 925.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 905.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 902.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 901.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 895.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 892.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 888.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 885.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 882.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 881.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 880.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 878.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 877.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 862.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 860.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 859.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 857.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 855.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 852.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 848.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 829.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 829.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 824.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 820.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 819.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 812.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 808.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 803.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 801.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 798.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 797.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 796.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 796.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 782.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 781.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 781.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 778.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 777.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 776.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 767.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 754.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 754.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 753.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 752.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 752.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 750.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 747.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 744.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 741.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 738.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 730.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 730.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 729.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 728.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 727.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 726.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 721.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 720.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 716.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 715.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 710.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 706.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 702.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 699.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 698.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 695.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 691.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 688.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 687.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 687.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 684.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 681.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 678.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 676.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 673.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 673.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 672.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 671.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 671.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 668.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 664.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 663.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 662.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 657.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 650.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 649.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 649.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 648.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 644.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 642.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 636.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 635.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 630.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 628.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 621.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 620.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 618.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 617.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 611.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 608.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 600.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 600.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 597.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 592.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 586.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 571.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 564.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 563.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 560.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 559.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 550.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 549.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 530.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 530.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 498.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 493.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 489.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 483.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 475.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 472.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 471.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 463.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 444.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 433.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 429.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 420.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 383.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 326.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 284.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 87.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

498.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 498.3
FF:10151-102I7 76 years, female 498.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.4
Sample C Female 0.7
Sample D Female 0.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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