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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:788.4 nTPM
HPA Brain:786.2 nTPM
GTEx:788.4 nTPM
FANTOM5:737.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

786.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 720.1
1981 Female, age 72, midline 920.0
2194 Female, age 79, both hemispheres 724.3
2048 Male, age 55, midline 674.4
2565 Male, age 75, midline 643.1
2816 Male, age 47, midline 638.9
Cervical spinal cord, dorsal horn
nTPM: 786.2
2173 Female, age 72, unknown 992.9
2296 Male, age 66, both hemispheres 981.1
2069 Male, age 47, both hemispheres 880.6
2297 Male, age 75, both hemispheres 674.1
1877 Male, age 55, unknown 635.1
2721 Male, age 90, both hemispheres 553.2
Cervical spinal cord, ventral horn
nTPM: 756.9
2098 Female, age 72, unknown 906.7
2480 Male, age 75, both hemispheres 849.8
2295 Male, age 66, both hemispheres 811.8
2809 Male, age 90, both hemispheres 736.8
2068 Male, age 55, unknown 670.8
2820 Female, age 79, both hemispheres 565.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

788.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 788.4
Samples: 159

Max nTPM: 1309.7
Min nTPM: 490.4
Std nTPM: 160.3
Median nTPM: 776.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1309.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1203.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1201.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1189.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1168.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1141.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1119.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1115.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1079.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1068.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1063.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1045.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1038.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1033.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1015.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 992.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 989.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 979.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 978.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 977.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 962.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 951.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 946.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 940.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 932.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 929.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 927.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 924.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 922.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 920.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 918.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 913.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 911.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 908.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 905.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 901.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 899.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 894.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 887.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 885.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 884.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 882.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 879.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 875.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 874.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 866.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 861.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 855.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 850.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 845.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 839.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 838.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 833.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 833.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 832.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 829.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 827.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 825.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 821.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 820.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 818.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 816.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 813.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 810.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 800.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 798.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 798.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 794.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 793.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 793.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 791.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 786.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 785.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 782.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 781.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 779.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 779.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 779.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 777.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 776.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 775.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 775.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 774.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 774.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 772.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 764.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 763.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 761.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 760.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 758.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 755.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 752.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 751.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 749.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 748.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 745.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 743.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 737.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 730.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 730.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 725.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 722.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 721.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 720.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 718.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 718.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 713.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 709.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 706.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 703.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 703.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 697.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 696.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 690.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 689.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 686.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 681.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 681.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 675.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 672.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 670.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 669.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 667.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 655.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 652.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 651.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 650.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 648.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 646.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 641.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 640.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 637.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 630.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 630.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 626.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 622.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 619.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 617.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 612.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 604.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 599.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 594.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 587.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 580.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 577.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 576.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 572.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 568.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 564.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 558.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 552.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 543.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 532.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 529.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 525.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 516.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 505.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 494.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 490.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

737.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 737.4
FF:10181-103D1 60 years, female 939.1
FF:10159-103A6 76 years, female 535.7

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