We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PEBP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PEBP1
BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:728.5 nTPM
FANTOM5:790.5 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

728.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 559.0
2188 Female, age 91, both hemispheres 582.4
2301 Female, age 85, both hemispheres 579.6
2090 Male, age 80, both hemispheres 555.2
1984 Male, age 76, both hemispheres 518.7
Area postrema
nTPM: 535.2
2799 Male, age 61, both hemispheres 566.6
2306 Male, age 80, both hemispheres 527.7
2054 Male, age 76, both hemispheres 511.2
Dorsal cochlear nucleus
nTPM: 560.0
2802 Male, age 74, right hemisphere 651.4
2187 Female, age 91, both hemispheres 612.1
2058 Male, age 76, both hemispheres 571.4
2370 Male, age 61, both hemispheres 491.9
2378 Male, age 80, both hemispheres 473.5
Dorsal medullary reticular nucleus
nTPM: 575.5
2040 Female, age 85, both hemispheres 717.6
2088 Male, age 76, both hemispheres 524.4
2373 Male, age 61, both hemispheres 484.6
Dorsal motor vagal complex
nTPM: 542.2
2000 Male, age 74, unknown 641.5
2844 Male, age 55, unknown 637.8
2133 Female, age 91, both hemispheres 611.4
2797 Male, age 61, both hemispheres 569.2
2643 Male, age 74, both hemispheres 525.7
2185 Male, age 76, both hemispheres 523.2
2813 Female, age 72, unknown 484.0
2807 Female, age 85, both hemispheres 344.8
Dorsal tegmental nucleus
nTPM: 560.4
2083 Male, age 80, both hemispheres 665.8
2326 Male, age 74, both hemispheres 662.9
1936 Male, age 76, left hemisphere 541.5
2358 Male, age 61, both hemispheres 371.2
Dorsolateral tegmental area
nTPM: 572.6
2751 Female, age 85, both hemispheres 710.2
2654 Male, age 80, both hemispheres 652.7
2360 Male, age 74, both hemispheres 594.6
2141 Male, age 76, both hemispheres 522.9
2337 Male, age 61, both hemispheres 382.9
Gigantocellular reticular nuclei, medullary
nTPM: 611.6
2462 Male, age 74, both hemispheres 654.0
2314 Male, age 61, both hemispheres 651.6
1876 Female, age 85, both hemispheres 640.0
2022 Male, age 76, right hemisphere 616.9
2387 Female, age 91, both hemispheres 583.2
2310 Male, age 80, both hemispheres 523.6
Gigantocellular reticular nuclei, pars
nTPM: 555.5
2168 Male, age 76, both hemispheres 661.3
2084 Female, age 85, both hemispheres 643.2
2336 Male, age 61, both hemispheres 530.6
2330 Male, age 80, both hemispheres 479.7
2706 Male, age 80, both hemispheres 462.6
Inferior olive
nTPM: 650.8
2563 Male, age 74, both hemispheres 874.0
2085 Female, age 85, both hemispheres 766.9
2178 Male, age 61, both hemispheres 578.9
2379 Male, age 80, both hemispheres 533.8
2628 Female, age 91, both hemispheres 500.3
Kolliker-Fuse nucleus
nTPM: 617.0
2315 Male, age 76, right hemisphere 701.8
2163 Male, age 80, both hemispheres 595.6
2793 Female, age 91, left hemisphere 553.8
Lateral lemniscal nuclei
nTPM: 618.5
2746 Female, age 85, left hemisphere 691.1
2169 Male, age 76, both hemispheres 669.9
2036 Male, age 80, both hemispheres 625.4
2453 Male, age 74, right hemisphere 590.0
2320 Female, age 91, left hemisphere 516.1
Lateral medullary reticular nucleus
nTPM: 668.2
2305 Male, age 74, both hemispheres 825.9
2044 Male, age 76, both hemispheres 684.8
2804 Female, age 91, both hemispheres 668.5
2190 Female, age 85, both hemispheres 642.9
2852 Male, age 80, both hemispheres 639.2
2374 Male, age 61, both hemispheres 547.8
Lateral parabrachial nucleus
nTPM: 606.8
2139 Female, age 85, right hemisphere 725.4
2792 Male, age 76, both hemispheres 630.8
2013 Male, age 80, both hemispheres 605.0
2790 Male, age 61, both hemispheres 466.2
Lateral vestibular nucleus
nTPM: 596.2
2311 Male, age 80, both hemispheres 607.3
2184 Male, age 76, both hemispheres 585.1
Locus coeruleus
nTPM: 609.4
2014 Male, age 55, unknown 704.7
2123 Female, age 91, both hemispheres 671.4
2317 Female, age 72, unknown 642.8
2788 Male, age 74, unknown 621.1
1980 Male, age 76, both hemispheres 556.0
2720 Male, age 74, both hemispheres 543.6
2162 Male, age 80, both hemispheres 525.9
Medial olivary nucleus
nTPM: 629.9
2138 Female, age 91, both hemispheres 769.8
1962 Male, age 76, both hemispheres 670.0
1943 Male, age 61, both hemispheres 587.8
2851 Male, age 80, both hemispheres 491.9
Medial parabrachial nucleus
nTPM: 600.1
2170 Female, age 91, both hemispheres 745.4
2463 Female, age 85, right hemisphere 646.1
2854 Male, age 80, both hemispheres 578.6
2786 Male, age 76, both hemispheres 536.8
2156 Male, age 61, both hemispheres 493.4
Medial periolivary nuclei
nTPM: 628.9
2063 Male, age 76, both hemispheres 750.6
2791 Male, age 74, right hemisphere 740.4
2171 Female, age 85, both hemispheres 690.8
2081 Male, age 80, both hemispheres 516.4
2458 Female, age 91, both hemispheres 446.2
Medial vestibular nucleus
nTPM: 632.1
2801 Male, age 74, both hemispheres 722.0
2803 Female, age 91, both hemispheres 674.6
2093 Male, age 80, both hemispheres 669.6
2743 Female, age 85, both hemispheres 647.7
2134 Male, age 76, both hemispheres 592.5
2624 Male, age 61, both hemispheres 486.4
Motor facial nucleus
nTPM: 600.9
2062 Male, age 76, both hemispheres 775.6
2365 Male, age 74, right hemisphere 719.7
2126 Male, age 61, both hemispheres 595.9
2795 Female, age 91, both hemispheres 528.0
2697 Female, age 85, both hemispheres 504.5
2327 Male, age 80, both hemispheres 481.7
Motor hypoglossal nucleus
nTPM: 551.1
2125 Female, age 91, both hemispheres 732.2
2132 Female, age 85, both hemispheres 626.8
2182 Male, age 80, both hemispheres 491.9
2277 Male, age 76, both hemispheres 482.7
2461 Male, age 61, both hemispheres 421.9
Motor trigeminal nucleus
nTPM: 540.8
2079 Male, age 80, both hemispheres 586.9
2309 Male, age 76, both hemispheres 565.5
2560 Male, age 74, both hemispheres 558.9
2335 Male, age 61, both hemispheres 521.6
2321 Female, age 91, both hemispheres 470.9
Nuclei of the trapezoid body
nTPM: 680.9
2159 Male, age 61, both hemispheres 822.2
1983 Male, age 76, both hemispheres 773.9
2735 Female, age 85, both hemispheres 743.4
2166 Male, age 80, both hemispheres 538.5
2368 Female, age 91, both hemispheres 526.7
Nucleus ambiguus
nTPM: 675.0
2071 Male, age 76, both hemispheres 745.8
2096 Female, age 85, both hemispheres 604.2
Nucleus cuneatus
nTPM: 529.4
2564 Male, age 74, both hemispheres 725.1
2376 Male, age 61, both hemispheres 555.8
2100 Male, age 76, both hemispheres 544.5
2131 Male, age 76, both hemispheres 525.9
2380 Male, age 80, both hemispheres 503.3
2562 Male, age 61, both hemispheres 499.6
2808 Female, age 85, both hemispheres 488.4
2381 Male, age 80, both hemispheres 479.4
2805 Female, age 91, both hemispheres 442.6
Nucleus gracilis
nTPM: 530.9
2627 Male, age 74, both hemispheres 676.9
2382 Male, age 80, both hemispheres 485.7
2299 Female, age 85, both hemispheres 430.1
Nucleus raphe magnus
nTPM: 666.3
2160 Male, age 61, both hemispheres 973.7
2455 Male, age 74, both hemispheres 712.5
2172 Female, age 85, both hemispheres 649.2
2051 Male, age 76, both hemispheres 634.2
2328 Male, age 80, both hemispheres 542.6
2459 Female, age 91, both hemispheres 485.7
Nucleus raphe obscurus
nTPM: 665.9
2845 Female, age 85, midline 717.1
2142 Male, age 76, midline 645.2
2800 Male, age 61, midline 635.3
Nucleus raphe pallidus
nTPM: 654.1
1924 Male, age 61, midline 723.6
2145 Male, age 76, midline 636.3
2183 Male, age 80, midline 602.5
Nucleus tractus solitarii
nTPM: 457.0
2144 Female, age 91, right hemisphere 581.4
2656 Male, age 76, both hemispheres 519.5
2191 Female, age 85, both hemispheres 392.5
2307 Male, age 80, both hemispheres 334.6
Paramedian reticular nucleus
nTPM: 636.9
2057 Male, age 80, both hemispheres 696.8
2050 Female, age 85, both hemispheres 693.5
2313 Male, age 61, both hemispheres 586.2
2052 Male, age 76, both hemispheres 571.1
Parvicellular reticular nuclei
nTPM: 582.0
2119 Male, age 80, both hemispheres 650.2
2095 Male, age 76, both hemispheres 619.6
2558 Male, age 74, both hemispheres 476.1
Parvicellular reticular nuclei, medullary
nTPM: 596.2
2189 Female, age 91, both hemispheres 642.6
2091 Female, age 85, both hemispheres 585.3
2181 Male, age 80, left hemisphere 560.5
Pedunculopontine tegmental nucleus
nTPM: 564.6
1921 Female, age 85, both hemispheres 623.0
2334 Male, age 80, both hemispheres 602.8
2338 Male, age 61, both hemispheres 468.1
Peritrigeminal nucleus
nTPM: 691.2
2067 Female, age 85, both hemispheres 708.5
2136 Male, age 76, both hemispheres 698.2
2179 Male, age 61, both hemispheres 666.8
Pontine nuclei
nTPM: 728.5
2727 Male, age 61, right hemisphere 970.0
1863 Male, age 55, unknown 868.5
2787 Female, age 85, both hemispheres 768.2
2109 Female, age 72, unknown 746.8
1968 Male, age 76, left hemisphere 700.0
2454 Male, age 74, left hemisphere 681.6
2319 Female, age 91, both hemispheres 592.3
2115 Male, age 80, left hemisphere 500.4
Pontine raphe nucleus
nTPM: 650.7
2122 Female, age 85, midline 702.2
2853 Male, age 76, midline 599.2
Posteroventral cochlear nucleus
nTPM: 610.9
2752 Female, age 85, both hemispheres 691.4
2070 Male, age 76, both hemispheres 626.9
2135 Female, age 91, both hemispheres 615.0
2341 Male, age 80, both hemispheres 584.0
2371 Male, age 61, both hemispheres 536.9
Prepositus hypoglossal nucleus
nTPM: 601.9
2855 Female, age 85, right hemisphere 674.2
2086 Male, age 80, both hemispheres 529.6
Principal sensory trigeminal nucleus
nTPM: 639.5
2158 Male, age 61, both hemispheres 842.0
2008 Male, age 80, left hemisphere 632.9
2324 Male, age 76, both hemispheres 570.6
2367 Female, age 91, left hemisphere 512.5
Reticular pontine nucleus, caudal
nTPM: 592.7
2092 Male, age 76, both hemispheres 682.8
2457 Female, age 91, both hemispheres 566.5
2559 Male, age 74, both hemispheres 564.6
2332 Male, age 80, right hemisphere 556.8
Reticular pontine nucleus, oral
nTPM: 631.2
2361 Male, age 74, both hemispheres 699.0
2012 Female, age 85, both hemispheres 677.2
1939 Male, age 80, both hemispheres 660.0
2167 Male, age 76, both hemispheres 571.3
2366 Female, age 91, both hemispheres 548.2
Reticulotegmental nucleus
nTPM: 579.5
2325 Male, age 76, both hemispheres 590.3
2452 Male, age 74, both hemispheres 581.9
2322 Female, age 91, both hemispheres 579.4
2333 Male, age 80, both hemispheres 566.3
Spinal trigeminal nucleus, caudal
nTPM: 573.6
2390 Female, age 91, both hemispheres 633.8
2447 Male, age 76, both hemispheres 613.1
2308 Male, age 80, both hemispheres 558.6
2642 Male, age 74, both hemispheres 533.5
2312 Male, age 61, both hemispheres 529.1
Spinal trigeminal nucleus, interpolar
nTPM: 632.0
2066 Male, age 76, right hemisphere 775.9
2033 Male, age 80, both hemispheres 607.8
2625 Male, age 61, both hemispheres 600.7
2386 Female, age 85, both hemispheres 591.6
2389 Female, age 91, both hemispheres 583.9
Spinal trigeminal nucleus, oral
nTPM: 573.7
2737 Female, age 85, both hemispheres 608.2
1978 Male, age 76, both hemispheres 570.1
2164 Male, age 80, both hemispheres 542.7
Spinal vestibular nucleus
nTPM: 624.0
2186 Female, age 91, both hemispheres 673.8
2748 Male, age 76, both hemispheres 661.0
2806 Female, age 85, both hemispheres 655.2
2780 Male, age 80, both hemispheres 650.9
2384 Male, age 74, both hemispheres 615.0
2796 Male, age 61, both hemispheres 488.2
Subcoeruleus area
nTPM: 614.7
2369 Female, age 85, left hemisphere 693.6
1958 Male, age 80, both hemispheres 636.5
2323 Female, age 91, left hemisphere 589.6
2451 Male, age 74, both hemispheres 584.9
2089 Male, age 76, left hemisphere 568.7
Superior olive
nTPM: 620.5
2364 Male, age 74, right hemisphere 791.9
1875 Female, age 85, both hemispheres 707.8
2020 Male, age 76, both hemispheres 665.1
2329 Male, age 80, right hemisphere 510.6
2561 Female, age 91, both hemispheres 427.0
Superior vestibular nucleus
nTPM: 659.5
2383 Male, age 74, both hemispheres 697.7
2015 Male, age 80, both hemispheres 644.6
2061 Male, age 76, both hemispheres 636.3
Ventral medullary reticular nucleus
nTPM: 599.1
2060 Male, age 76, both hemispheres 625.9
2372 Male, age 61, both hemispheres 572.3
Ventral periolivary nuclei
nTPM: 597.0
2023 Male, age 76, both hemispheres 688.3
2130 Female, age 85, both hemispheres 647.8
2165 Male, age 80, both hemispheres 646.4
2794 Female, age 91, left hemisphere 405.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 642.7
1986 Male, age 76, both hemispheres 698.6
2302 Female, age 91, both hemispheres 677.5
2741 Female, age 85, both hemispheres 663.7
2180 Male, age 61, both hemispheres 623.4
2118 Male, age 80, both hemispheres 550.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 569.5
2449 Male, age 74, both hemispheres 631.0
1959 Male, age 76, both hemispheres 628.7
2840 Female, age 85, both hemispheres 609.2
2161 Male, age 80, both hemispheres 536.2
2359 Male, age 61, both hemispheres 509.9
2456 Female, age 91, both hemispheres 502.2

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

790.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 744.3
FF:10182-103D2 60 years, female 889.9
FF:10165-103B3 76 years, female 598.7
Medulla oblongata
Scaled Tags Per Million: 760.7
FF:10174-103C3 60 years, female 977.8
FF:10038-101F2 18-64 years, mixed 726.3
FF:10155-103A2 76 years, female 578.0
Pons
Scaled Tags Per Million: 790.5
FF:10033-101E6 18-54 years, mixed 790.5

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org