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SLC22A17
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:160.6 nTPM
HPA Brain:336.9 nTPM
GTEx:160.6 nTPM
FANTOM5:326.8 Scaled Tags Per Million
Pig:428.6 nTPM
Mouse:391.7 nTPM
Allen mouse:23.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.9
Sample id Sample description nTPM
Amygdala
nTPM: 296.0
1987 Female, age 91, left hemisphere 387.8
2517 Female, age 94, left hemisphere 330.8
2814 Male, age 76, right hemisphere 303.6
2514 Male, age 75, right hemisphere 268.8
2695 Female, age 67, right hemisphere 189.3
Basal amygdala
nTPM: 283.6
2685 Female, age 94, left hemisphere 353.3
2243 Female, age 91, right hemisphere 329.2
2110 Male, age 80, left hemisphere 302.2
1955 Male, age 76, both hemispheres 279.8
2609 Male, age 75, right hemisphere 249.0
2827 Female, age 67, right hemisphere 188.1
Central amygdala
nTPM: 336.9
2826 Female, age 94, left hemisphere 408.5
2701 Female, age 91, right hemisphere 360.9
2239 Male, age 80, left hemisphere 343.9
2515 Male, age 75, right hemisphere 287.6
1905 Male, age 76, both hemispheres 283.4
Corticomedial amygdala
nTPM: 281.0
2829 Male, age 80, left hemisphere 367.6
2242 Female, age 91, right hemisphere 363.7
2429 Female, age 94, left hemisphere 289.1
2240 Male, age 76, both hemispheres 227.6
2428 Male, age 75, right hemisphere 224.7
2535 Female, age 67, right hemisphere 213.6
Lateral amygdala
nTPM: 295.1
2534 Female, age 94, left hemisphere 415.6
2255 Female, age 91, right hemisphere 375.4
1883 Male, age 76, both hemispheres 300.2
2256 Male, age 80, left hemisphere 261.7
2516 Male, age 75, right hemisphere 253.6
2830 Female, age 67, right hemisphere 163.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 160.6
Samples: 152

Max nTPM: 360.5
Min nTPM: 9.7
Std nTPM: 51.3
Median nTPM: 156.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 360.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 288.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 276.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 273.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 263.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 259.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 255.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 254.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 252.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 247.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 245.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 244.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 230.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 227.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 227.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 214.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 212.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 211.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 210.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 210.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 209.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 209.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 206.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 202.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 201.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 199.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 199.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 197.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 196.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 196.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 195.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 195.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 194.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 192.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 192.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 188.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 186.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 185.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 184.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 183.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 182.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 182.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 180.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 179.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 179.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 177.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 177.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 177.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 176.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 175.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 175.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 174.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 170.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 169.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 169.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 168.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 168.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 165.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 164.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 161.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 160.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 160.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 159.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 158.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 158.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 157.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 157.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 156.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 156.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 156.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 155.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 155.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 155.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 153.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 152.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 152.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 152.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 152.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 151.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 150.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 149.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 148.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 147.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 146.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 146.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 145.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 144.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 143.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 143.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 141.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 141.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 141.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 140.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 140.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 138.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 137.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 137.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 134.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 130.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 126.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 123.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 122.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 121.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 117.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 117.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 115.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 115.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 114.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 113.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 113.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 111.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 111.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 110.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 108.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 108.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 107.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 106.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 104.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 103.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 100.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 100.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 98.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 92.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 85.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 83.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 75.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 73.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 67.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

326.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 326.8
FF:10151-102I7 76 years, female 326.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

428.6
Pig sample Sample description nTPM
Amygdala
nTPM: 428.6
Samples: 4

Max nTPM: 622.9
Min nTPM: 310.4
Sample A Female 622.9
Sample B Female 310.4
Sample C Male 364.5
Sample D Male 416.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 391.7
Samples: 4

Max nTPM: 448.0
Min nTPM: 349.8
Sample A Male 448.0
Sample B Male 349.8
Sample C Female 392.6
Sample D Female 376.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.3
74635072 Antisense, RP_060215_03_C09, Mouse strain C57BL/6J (56 days, male) 23.3

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