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SLC22A17
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  • SLC22A17
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:403.1 nTPM
FANTOM5:272.7 Scaled Tags Per Million
Pig:556.2 nTPM
Mouse:234.1 nTPM
Allen mouse:14.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

403.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 200.7
2032 Female, age 42, unknown 252.8
2497 Male, age 66, unknown 216.0
2396 Male, age 61, right hemisphere 133.3
Centromedial thalamic nucleus
nTPM: 192.9
2401 Male, age 76, right hemisphere 266.9
2279 Female, age 85, left hemisphere 118.9
Habenula
nTPM: 403.1
2203 Male, age 61, left hemisphere 504.8
1957 Male, age 80, both hemispheres 370.1
2276 Male, age 66, unknown 369.3
2252 Male, age 62, unknown 368.3
Lateral geniculate body
nTPM: 274.2
2106 Female, age 67, right hemisphere 460.2
1953 Male, age 62, unknown 333.9
2399 Male, age 61, left hemisphere 297.9
2035 Female, age 72, unknown 274.8
2857 Male, age 74, right hemisphere 239.6
2841 Male, age 80, both hemispheres 217.4
2575 Female, age 94, right hemisphere 188.5
2659 Male, age 66, unknown 181.2
Lateral thalamic nuclei
nTPM: 242.2
2765 Female, age 67, both hemispheres 346.2
1903 Male, age 76, left hemisphere 310.2
2573 Female, age 94, left hemisphere 216.7
2661 Female, age 72, unknown 180.5
2577 Male, age 74, both hemispheres 157.2
Medial dorsal thalamic nucleus
nTPM: 299.9
2498 Male, age 66, unknown 432.2
2039 Female, age 72, unknown 412.3
1971 Male, age 61, right hemisphere 373.9
2492 Male, age 75, right hemisphere 326.5
1810 Male, age 48, unknown 321.0
2026 Male, age 62, unknown 308.1
1930 Female, age 42, unknown 307.2
1859 Male, age 76, both hemispheres 293.0
2283 Male, age 80, right hemisphere 273.6
2576 Male, age 74, both hemispheres 253.0
2402 Female, age 67, both hemispheres 225.8
2572 Female, age 94, right hemisphere 196.4
2660 Female, age 72, unknown 175.5
Medial geniculate body
nTPM: 260.7
1811 Female, age 42, unknown 301.0
2049 Male, age 76, both hemispheres 295.2
2650 Female, age 94, left hemisphere 279.5
2657 Male, age 74, right hemisphere 266.4
2207 Male, age 80, right hemisphere 230.6
2571 Male, age 75, right hemisphere 227.8
2217 Female, age 72, unknown 224.5
Nucleus reuniens
nTPM: 335.2
2212 Female, age 67, left hemisphere 525.4
2205 Male, age 80, left hemisphere 327.1
2210 Female, age 85, left hemisphere 153.2
Nucleus rhomboideus
nTPM: 253.4
2206 Male, age 80, both hemispheres 326.3
2213 Female, age 67, left hemisphere 291.1
2280 Female, age 85, left hemisphere 142.9
Posterior thalamic nucleus
nTPM: 247.9
2266 Male, age 76, right hemisphere 269.8
2495 Female, age 67, right hemisphere 245.9
2655 Male, age 74, right hemisphere 243.7
2649 Female, age 94, both hemispheres 232.1
Pulvinar
nTPM: 259.5
1972 Male, age 62, unknown 353.1
1932 Male, age 80, right hemisphere 284.8
2398 Male, age 61, left hemisphere 280.1
1929 Male, age 48, unknown 265.4
2214 Male, age 76, right hemisphere 256.7
1899 Female, age 42, unknown 248.1
2499 Male, age 66, unknown 244.2
2496 Female, age 67, right hemisphere 240.2
2582 Female, age 72, unknown 228.0
2724 Male, age 74, right hemisphere 193.8
Subthalamic nucleus
nTPM: 340.7
2406 Female, age 72, unknown 585.6
2779 Female, age 42, unknown 353.8
2124 Male, age 62, unknown 339.0
2282 Male, age 61, both hemispheres 315.3
2275 Male, age 66, unknown 300.0
2658 Male, age 74, both hemispheres 283.9
2056 Female, age 72, unknown 283.1
2216 Male, age 48, unknown 264.9
Ventral posterolateral thalamic nucleus
nTPM: 241.1
2740 Male, age 76, right hemisphere 315.8
2197 Male, age 80, both hemispheres 283.0
2570 Male, age 75, right hemisphere 267.8
2397 Male, age 61, right hemisphere 262.5
2578 Male, age 74, both hemispheres 183.3
2581 Female, age 72, unknown 134.1
Ventral posteromedial thalamic nucleus
nTPM: 283.1
2202 Male, age 61, left hemisphere 331.0
2281 Male, age 75, right hemisphere 321.4
2758 Male, age 80, both hemispheres 289.0
2127 Male, age 76, right hemisphere 265.7
2653 Male, age 74, both hemispheres 208.3
Ventral thalamic nuclei
nTPM: 244.0
1912 Female, age 42, unknown 316.4
2291 Female, age 72, unknown 277.0
1860 Male, age 76, both hemispheres 274.1
2285 Male, age 62, unknown 262.5
1845 Male, age 48, unknown 261.7
2204 Male, age 80, both hemispheres 233.0
2858 Female, age 72, unknown 197.8
2652 Male, age 74, left hemisphere 191.7
2580 Male, age 66, unknown 181.7
Zona incerta
nTPM: 239.4
2208 Male, age 80, right hemisphere 284.2
2215 Male, age 66, unknown 263.6
2403 Male, age 62, unknown 227.7
2822 Male, age 74, right hemisphere 212.3
2663 Female, age 72, unknown 208.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 272.7
FF:10154-103A1 76 years, female 272.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

556.2
Pig sample Sample description nTPM
Thalamus
nTPM: 556.2
Samples: 4

Max nTPM: 747.1
Min nTPM: 426.1
Sample A Female 747.1
Sample B Female 591.1
Sample C Male 460.3
Sample D Male 426.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 234.2
Samples: 4

Max nTPM: 273.3
Min nTPM: 210.1
Sample A Male 273.3
Sample B Male 210.1
Sample C Female 223.4
Sample D Female 229.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 14.0
74635072 Antisense, RP_060215_03_C09, Mouse strain C57BL/6J (56 days, male) 14.0

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