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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:272.2 nTPM
HPA Brain:264.6 nTPM
GTEx:272.2 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:219.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.6
Sample id Sample description nTPM
Amygdala
nTPM: 264.6
2514 Male, age 75, right hemisphere 288.8
2695 Female, age 67, right hemisphere 287.6
2814 Male, age 76, right hemisphere 260.7
1987 Female, age 91, left hemisphere 260.6
2517 Female, age 94, left hemisphere 225.5
Basal amygdala
nTPM: 223.3
2609 Male, age 75, right hemisphere 251.0
2110 Male, age 80, left hemisphere 246.5
1955 Male, age 76, both hemispheres 220.8
2243 Female, age 91, right hemisphere 219.9
2827 Female, age 67, right hemisphere 210.8
2685 Female, age 94, left hemisphere 191.1
Central amygdala
nTPM: 244.3
2826 Female, age 94, left hemisphere 288.9
2515 Male, age 75, right hemisphere 256.8
2239 Male, age 80, left hemisphere 237.5
1905 Male, age 76, both hemispheres 233.2
2701 Female, age 91, right hemisphere 204.8
Corticomedial amygdala
nTPM: 225.8
2829 Male, age 80, left hemisphere 251.8
2428 Male, age 75, right hemisphere 243.4
2240 Male, age 76, both hemispheres 241.3
2242 Female, age 91, right hemisphere 231.7
2429 Female, age 94, left hemisphere 202.4
2535 Female, age 67, right hemisphere 184.4
Lateral amygdala
nTPM: 233.9
2516 Male, age 75, right hemisphere 282.3
2830 Female, age 67, right hemisphere 260.8
1883 Male, age 76, both hemispheres 233.8
2534 Female, age 94, left hemisphere 229.4
2256 Male, age 80, left hemisphere 212.9
2255 Female, age 91, right hemisphere 184.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 272.2
Samples: 152

Max nTPM: 476.5
Min nTPM: 180.2
Std nTPM: 50.2
Median nTPM: 261.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 476.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 422.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 410.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 409.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 408.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 398.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 393.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 389.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 373.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 356.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 354.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 352.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 348.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 341.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 339.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 334.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 331.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 326.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 324.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 324.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 322.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 319.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 318.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 317.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 317.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 317.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 312.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 312.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 307.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 307.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 306.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 304.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 300.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 299.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 298.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 297.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 294.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 293.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 293.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 292.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 290.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 283.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 283.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 282.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 282.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 281.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 281.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 280.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 280.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 280.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 279.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 279.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 279.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 278.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 278.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 276.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 275.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 275.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 274.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 274.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 274.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 274.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 272.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 270.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 270.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 269.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 268.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 267.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 267.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 267.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 266.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 265.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 265.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 264.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 262.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 261.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 261.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 261.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 261.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 260.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 260.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 260.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 259.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 259.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 258.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 258.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 258.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 257.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 257.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 257.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 256.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 254.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 254.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 254.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 252.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 252.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 250.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 249.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 249.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 249.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 248.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 247.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 246.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 246.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 245.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 245.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 244.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 244.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 243.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 243.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 242.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 240.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 239.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 239.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 239.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 238.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 237.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 237.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 235.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 235.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 231.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 229.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 228.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 228.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 227.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 227.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 226.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 226.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 225.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 225.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 225.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 224.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 224.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 223.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 222.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 221.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 220.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 218.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 218.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 215.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 214.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 213.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 212.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 209.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 202.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 202.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 198.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 191.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 187.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 184.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 18.7
FF:10151-102I7 76 years, female 18.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.3
Pig sample Sample description nTPM
Amygdala
nTPM: 219.3
Samples: 4

Max nTPM: 284.8
Min nTPM: 170.5
Sample A Female 284.8
Sample B Female 226.4
Sample C Male 195.3
Sample D Male 170.5

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