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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:317.4 nTPM
HPA Brain:313.3 nTPM
GTEx:317.4 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:310.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 274.1
1981 Female, age 72, midline 325.7
2565 Male, age 75, midline 285.7
2048 Male, age 55, midline 284.9
2194 Female, age 79, both hemispheres 238.9
2816 Male, age 47, midline 235.2
Cervical spinal cord, dorsal horn
nTPM: 308.2
2296 Male, age 66, both hemispheres 356.1
2069 Male, age 47, both hemispheres 350.5
2173 Female, age 72, unknown 339.5
2297 Male, age 75, both hemispheres 280.7
1877 Male, age 55, unknown 276.5
2721 Male, age 90, both hemispheres 245.9
Cervical spinal cord, ventral horn
nTPM: 313.3
2480 Male, age 75, both hemispheres 374.5
2098 Female, age 72, unknown 368.2
2809 Male, age 90, both hemispheres 347.4
2295 Male, age 66, both hemispheres 319.8
2068 Male, age 55, unknown 266.5
2820 Female, age 79, both hemispheres 203.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 317.4
Samples: 159

Max nTPM: 464.9
Min nTPM: 186.8
Std nTPM: 52.0
Median nTPM: 317.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 464.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 452.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 442.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 433.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 424.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 416.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 414.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 404.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 403.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 399.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 388.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 383.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 383.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 382.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 379.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 376.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 373.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 373.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 372.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 372.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 371.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 370.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 370.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 369.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 369.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 368.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 367.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 365.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 362.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 361.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 358.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 357.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 356.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 356.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 354.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 353.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 353.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 352.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 351.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 351.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 350.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 349.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 349.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 349.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 349.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 348.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 347.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 345.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 345.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 343.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 342.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 341.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 340.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 338.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 337.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 337.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 336.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 335.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 334.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 334.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 334.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 333.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 333.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 333.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 333.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 333.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 332.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 331.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 331.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 331.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 330.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 329.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 328.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 327.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 323.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 323.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 321.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 320.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 318.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 317.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 317.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 317.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 316.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 315.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 314.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 313.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 311.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 311.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 311.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 310.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 309.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 309.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 308.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 308.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 306.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 305.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 305.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 303.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 302.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 300.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 299.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 298.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 298.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 298.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 296.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 295.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 295.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 294.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 292.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 289.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 289.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 287.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 287.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 285.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 285.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 284.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 283.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 282.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 282.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 282.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 282.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 281.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 280.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 277.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 275.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 274.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 272.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 272.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 270.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 269.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 268.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 267.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 267.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 267.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 267.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 263.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 260.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 260.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 260.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 259.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 259.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 259.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 255.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 251.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 251.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 249.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 247.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 247.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 237.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 235.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 225.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 219.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 216.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 211.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 210.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 208.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 201.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 197.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 186.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.8
FF:10181-103D1 60 years, female 22.6
FF:10159-103A6 76 years, female 13.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 288.5
Samples: 4

Max nTPM: 320.2
Min nTPM: 246.2
Sample A Female 273.7
Sample B Female 320.2
Sample C Male 314.0
Sample D Male 246.2
Ventral spinal cord
nTPM: 311.0
Samples: 4

Max nTPM: 331.4
Min nTPM: 296.1
Sample A Female 302.2
Sample B Female 314.1
Sample C Male 296.1
Sample D Male 331.4

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