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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:315.6 nTPM
FANTOM5:17.5 Scaled Tags Per Million
Pig:288.2 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

315.6
Sample id Sample description nTPM
Area postrema
nTPM: 250.6
2306 Male, age 80, both hemispheres 258.7
2054 Male, age 76, both hemispheres 253.9
2799 Male, age 61, both hemispheres 239.3
Dorsal medullary reticular nucleus
nTPM: 228.1
2040 Female, age 85, both hemispheres 233.2
2088 Male, age 76, both hemispheres 228.2
2373 Male, age 61, both hemispheres 223.0
Dorsal motor vagal complex
nTPM: 244.8
2813 Female, age 72, unknown 272.4
2185 Male, age 76, both hemispheres 264.3
2844 Male, age 55, unknown 252.8
2643 Male, age 74, both hemispheres 247.5
2133 Female, age 91, both hemispheres 240.1
2000 Male, age 74, unknown 236.9
2797 Male, age 61, both hemispheres 224.5
2807 Female, age 85, both hemispheres 219.7
Gigantocellular reticular nuclei, medullary
nTPM: 254.8
2387 Female, age 91, both hemispheres 286.1
2314 Male, age 61, both hemispheres 285.2
1876 Female, age 85, both hemispheres 258.9
2022 Male, age 76, right hemisphere 249.6
2310 Male, age 80, both hemispheres 236.0
2462 Male, age 74, both hemispheres 212.7
Gigantocellular reticular nuclei, pars
nTPM: 234.4
2084 Female, age 85, both hemispheres 254.7
2336 Male, age 61, both hemispheres 237.9
2330 Male, age 80, both hemispheres 228.7
2706 Male, age 80, both hemispheres 226.9
2168 Male, age 76, both hemispheres 223.9
Inferior olive
nTPM: 278.4
2563 Male, age 74, both hemispheres 288.1
2085 Female, age 85, both hemispheres 282.4
2628 Female, age 91, both hemispheres 279.3
2379 Male, age 80, both hemispheres 277.2
2178 Male, age 61, both hemispheres 264.7
Lateral medullary reticular nucleus
nTPM: 270.4
2305 Male, age 74, both hemispheres 305.6
2804 Female, age 91, both hemispheres 281.5
2374 Male, age 61, both hemispheres 277.1
2852 Male, age 80, both hemispheres 261.6
2190 Female, age 85, both hemispheres 258.0
2044 Male, age 76, both hemispheres 238.4
Medial olivary nucleus
nTPM: 315.6
1943 Male, age 61, both hemispheres 330.6
1962 Male, age 76, both hemispheres 329.6
2138 Female, age 91, both hemispheres 315.0
2851 Male, age 80, both hemispheres 287.5
Medial vestibular nucleus
nTPM: 254.7
2801 Male, age 74, both hemispheres 286.7
2803 Female, age 91, both hemispheres 277.6
2624 Male, age 61, both hemispheres 253.5
2093 Male, age 80, both hemispheres 242.5
2743 Female, age 85, both hemispheres 240.0
2134 Male, age 76, both hemispheres 228.2
Motor hypoglossal nucleus
nTPM: 246.3
2125 Female, age 91, both hemispheres 267.6
2132 Female, age 85, both hemispheres 260.9
2182 Male, age 80, both hemispheres 243.6
2461 Male, age 61, both hemispheres 236.7
2277 Male, age 76, both hemispheres 222.6
Nucleus ambiguus
nTPM: 266.4
2071 Male, age 76, both hemispheres 324.2
2096 Female, age 85, both hemispheres 208.7
Nucleus cuneatus
nTPM: 232.7
2380 Male, age 80, both hemispheres 258.1
2564 Male, age 74, both hemispheres 256.6
2808 Female, age 85, both hemispheres 251.9
2805 Female, age 91, both hemispheres 232.6
2376 Male, age 61, both hemispheres 227.4
2381 Male, age 80, both hemispheres 227.3
2131 Male, age 76, both hemispheres 221.2
2100 Male, age 76, both hemispheres 219.2
2562 Male, age 61, both hemispheres 199.9
Nucleus gracilis
nTPM: 262.8
2627 Male, age 74, both hemispheres 304.7
2382 Male, age 80, both hemispheres 247.1
2299 Female, age 85, both hemispheres 236.5
Nucleus raphe obscurus
nTPM: 292.7
2142 Male, age 76, midline 316.0
2845 Female, age 85, midline 299.0
2800 Male, age 61, midline 263.3
Nucleus raphe pallidus
nTPM: 292.3
1924 Male, age 61, midline 320.4
2145 Male, age 76, midline 305.2
2183 Male, age 80, midline 251.4
Nucleus tractus solitarii
nTPM: 229.1
2144 Female, age 91, right hemisphere 269.4
2191 Female, age 85, both hemispheres 229.3
2656 Male, age 76, both hemispheres 227.9
2307 Male, age 80, both hemispheres 189.5
Parvicellular reticular nuclei
nTPM: 239.5
2095 Male, age 76, both hemispheres 264.0
2119 Male, age 80, both hemispheres 262.3
2558 Male, age 74, both hemispheres 192.2
Parvicellular reticular nuclei, medullary
nTPM: 241.4
2189 Female, age 91, both hemispheres 247.2
2091 Female, age 85, both hemispheres 242.2
2181 Male, age 80, left hemisphere 234.7
Peritrigeminal nucleus
nTPM: 269.9
2136 Male, age 76, both hemispheres 291.3
2067 Female, age 85, both hemispheres 272.9
2179 Male, age 61, both hemispheres 245.6
Prepositus hypoglossal nucleus
nTPM: 247.3
2855 Female, age 85, right hemisphere 258.7
2086 Male, age 80, both hemispheres 235.9
Spinal trigeminal nucleus, caudal
nTPM: 249.3
2312 Male, age 61, both hemispheres 271.9
2642 Male, age 74, both hemispheres 253.8
2390 Female, age 91, both hemispheres 247.8
2308 Male, age 80, both hemispheres 243.1
2447 Male, age 76, both hemispheres 230.0
Spinal trigeminal nucleus, interpolar
nTPM: 246.0
2066 Male, age 76, right hemisphere 249.9
2625 Male, age 61, both hemispheres 249.3
2389 Female, age 91, both hemispheres 245.7
2033 Male, age 80, both hemispheres 243.0
2386 Female, age 85, both hemispheres 242.2
Spinal vestibular nucleus
nTPM: 258.3
2384 Male, age 74, both hemispheres 278.0
2806 Female, age 85, both hemispheres 270.1
2186 Female, age 91, both hemispheres 259.9
2748 Male, age 76, both hemispheres 256.7
2796 Male, age 61, both hemispheres 246.6
2780 Male, age 80, both hemispheres 238.6
Superior vestibular nucleus
nTPM: 289.5
2383 Male, age 74, both hemispheres 336.5
2061 Male, age 76, both hemispheres 268.0
2015 Male, age 80, both hemispheres 264.1
Ventral medullary reticular nucleus
nTPM: 258.4
2372 Male, age 61, both hemispheres 275.5
2060 Male, age 76, both hemispheres 241.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 265.6
2302 Female, age 91, both hemispheres 275.9
1986 Male, age 76, both hemispheres 273.6
2180 Male, age 61, both hemispheres 268.1
2118 Male, age 80, both hemispheres 265.9
2741 Female, age 85, both hemispheres 244.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 17.5
FF:10155-103A2 76 years, female 19.0
FF:10038-101F2 18-64 years, mixed 16.9
FF:10174-103C3 60 years, female 16.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 288.2
Samples: 4

Max nTPM: 309.4
Min nTPM: 256.8
Sample A Female 300.3
Sample B Female 256.8
Sample C Male 286.4
Sample D Male 309.4

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