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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:275.1 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:285.3 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 265.7
2396 Male, age 61, right hemisphere 344.1
2032 Female, age 42, unknown 226.8
2497 Male, age 66, unknown 226.1
Centromedial thalamic nucleus
nTPM: 223.4
2401 Male, age 76, right hemisphere 237.2
2279 Female, age 85, left hemisphere 209.6
Habenula
nTPM: 241.8
1957 Male, age 80, both hemispheres 257.3
2203 Male, age 61, left hemisphere 252.4
2252 Male, age 62, unknown 240.3
2276 Male, age 66, unknown 217.1
Lateral geniculate body
nTPM: 253.1
2575 Female, age 94, right hemisphere 285.4
2857 Male, age 74, right hemisphere 262.5
2841 Male, age 80, both hemispheres 258.2
1953 Male, age 62, unknown 251.0
2106 Female, age 67, right hemisphere 249.8
2399 Male, age 61, left hemisphere 244.5
2035 Female, age 72, unknown 242.3
2659 Male, age 66, unknown 230.7
Lateral thalamic nuclei
nTPM: 252.6
2573 Female, age 94, left hemisphere 298.6
2765 Female, age 67, both hemispheres 289.0
2661 Female, age 72, unknown 234.6
2577 Male, age 74, both hemispheres 223.9
1903 Male, age 76, left hemisphere 216.7
Medial dorsal thalamic nucleus
nTPM: 240.8
2572 Female, age 94, right hemisphere 327.0
1971 Male, age 61, right hemisphere 250.9
1810 Male, age 48, unknown 243.8
2026 Male, age 62, unknown 242.2
2283 Male, age 80, right hemisphere 240.8
2498 Male, age 66, unknown 240.0
2402 Female, age 67, both hemispheres 239.5
1930 Female, age 42, unknown 236.9
2039 Female, age 72, unknown 236.6
1859 Male, age 76, both hemispheres 233.6
2576 Male, age 74, both hemispheres 226.7
2660 Female, age 72, unknown 211.6
2492 Male, age 75, right hemisphere 200.6
Medial geniculate body
nTPM: 247.9
1811 Female, age 42, unknown 269.4
2650 Female, age 94, left hemisphere 268.3
2049 Male, age 76, both hemispheres 252.4
2657 Male, age 74, right hemisphere 242.3
2207 Male, age 80, right hemisphere 239.0
2217 Female, age 72, unknown 234.0
2571 Male, age 75, right hemisphere 230.1
Nucleus reuniens
nTPM: 238.9
2205 Male, age 80, left hemisphere 241.7
2212 Female, age 67, left hemisphere 240.1
2210 Female, age 85, left hemisphere 234.8
Nucleus rhomboideus
nTPM: 238.4
2213 Female, age 67, left hemisphere 258.4
2206 Male, age 80, both hemispheres 238.5
2280 Female, age 85, left hemisphere 218.4
Posterior thalamic nucleus
nTPM: 275.1
2649 Female, age 94, both hemispheres 379.0
2266 Male, age 76, right hemisphere 262.5
2655 Male, age 74, right hemisphere 236.3
2495 Female, age 67, right hemisphere 222.6
Pulvinar
nTPM: 247.5
2499 Male, age 66, unknown 267.8
2724 Male, age 74, right hemisphere 263.3
2496 Female, age 67, right hemisphere 253.4
1972 Male, age 62, unknown 251.6
2214 Male, age 76, right hemisphere 250.1
1929 Male, age 48, unknown 247.0
1932 Male, age 80, right hemisphere 246.6
2398 Male, age 61, left hemisphere 236.5
1899 Female, age 42, unknown 234.5
2582 Female, age 72, unknown 224.5
Subthalamic nucleus
nTPM: 253.5
2124 Male, age 62, unknown 301.5
2658 Male, age 74, both hemispheres 263.0
2056 Female, age 72, unknown 253.4
2282 Male, age 61, both hemispheres 252.6
2275 Male, age 66, unknown 252.1
2406 Female, age 72, unknown 238.2
2779 Female, age 42, unknown 235.5
2216 Male, age 48, unknown 231.7
Ventral posterolateral thalamic nucleus
nTPM: 218.1
2197 Male, age 80, both hemispheres 242.1
2740 Male, age 76, right hemisphere 239.7
2397 Male, age 61, right hemisphere 229.3
2578 Male, age 74, both hemispheres 218.9
2570 Male, age 75, right hemisphere 215.7
2581 Female, age 72, unknown 163.2
Ventral posteromedial thalamic nucleus
nTPM: 231.2
2127 Male, age 76, right hemisphere 253.4
2202 Male, age 61, left hemisphere 246.7
2281 Male, age 75, right hemisphere 228.6
2758 Male, age 80, both hemispheres 225.5
2653 Male, age 74, both hemispheres 201.7
Ventral thalamic nuclei
nTPM: 240.6
1860 Male, age 76, both hemispheres 269.7
2580 Male, age 66, unknown 262.0
1845 Male, age 48, unknown 256.8
2291 Female, age 72, unknown 247.3
2204 Male, age 80, both hemispheres 241.4
2285 Male, age 62, unknown 240.8
1912 Female, age 42, unknown 236.9
2858 Female, age 72, unknown 207.3
2652 Male, age 74, left hemisphere 202.9
Zona incerta
nTPM: 241.0
2215 Male, age 66, unknown 275.1
2822 Male, age 74, right hemisphere 261.8
2403 Male, age 62, unknown 249.0
2208 Male, age 80, right hemisphere 231.8
2663 Female, age 72, unknown 187.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 21.2
FF:10154-103A1 76 years, female 21.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.3
Pig sample Sample description nTPM
Thalamus
nTPM: 285.3
Samples: 4

Max nTPM: 332.1
Min nTPM: 225.6
Sample A Female 332.1
Sample B Female 225.6
Sample C Male 294.9
Sample D Male 288.7

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