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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:682.8 nTPM
HPA Brain:285.8 nTPM
GTEx:682.8 nTPM
FANTOM5:197.2 Scaled Tags Per Million
Pig:310.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.8
Sample id Sample description nTPM
Amygdala
nTPM: 285.8
2814 Male, age 76, right hemisphere 351.5
2695 Female, age 67, right hemisphere 331.3
2514 Male, age 75, right hemisphere 278.1
1987 Female, age 91, left hemisphere 246.8
2517 Female, age 94, left hemisphere 221.3
Basal amygdala
nTPM: 235.0
1955 Male, age 76, both hemispheres 268.5
2609 Male, age 75, right hemisphere 264.8
2827 Female, age 67, right hemisphere 240.2
2110 Male, age 80, left hemisphere 237.1
2243 Female, age 91, right hemisphere 208.8
2685 Female, age 94, left hemisphere 190.7
Central amygdala
nTPM: 260.1
1905 Male, age 76, both hemispheres 332.1
2826 Female, age 94, left hemisphere 288.7
2515 Male, age 75, right hemisphere 244.8
2239 Male, age 80, left hemisphere 226.7
2701 Female, age 91, right hemisphere 208.1
Corticomedial amygdala
nTPM: 232.1
2240 Male, age 76, both hemispheres 267.1
2428 Male, age 75, right hemisphere 257.7
2829 Male, age 80, left hemisphere 227.7
2242 Female, age 91, right hemisphere 226.5
2429 Female, age 94, left hemisphere 219.0
2535 Female, age 67, right hemisphere 194.8
Lateral amygdala
nTPM: 250.2
1883 Male, age 76, both hemispheres 305.7
2830 Female, age 67, right hemisphere 301.6
2516 Male, age 75, right hemisphere 268.5
2534 Female, age 94, left hemisphere 249.2
2256 Male, age 80, left hemisphere 207.2
2255 Female, age 91, right hemisphere 169.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

682.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 682.8
Samples: 152

Max nTPM: 1668.5
Min nTPM: 304.5
Std nTPM: 203.3
Median nTPM: 641.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1668.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1537.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1231.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1230.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1223.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1167.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1146.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1103.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1054.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1038.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1015.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 987.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 985.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 973.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 962.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 958.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 947.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 933.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 904.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 895.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 885.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 842.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 840.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 839.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 839.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 816.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 801.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 793.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 792.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 792.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 791.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 786.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 771.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 764.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 756.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 743.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 733.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 726.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 723.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 722.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 721.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 719.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 715.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 711.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 711.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 705.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 697.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 695.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 693.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 691.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 690.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 687.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 686.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 685.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 682.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 682.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 681.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 680.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 674.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 674.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 672.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 668.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 668.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 668.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 667.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 665.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 662.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 659.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 655.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 651.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 651.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 647.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 645.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 645.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 645.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 644.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 638.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 637.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 636.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 633.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 632.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 630.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 626.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 624.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 622.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 621.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 618.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 616.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 615.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 615.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 613.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 611.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 607.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 606.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 606.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 605.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 605.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 603.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 596.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 596.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 594.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 593.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 591.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 588.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 588.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 587.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 585.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 584.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 579.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 579.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 577.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 577.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 575.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 574.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 574.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 569.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 552.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 551.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 551.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 550.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 546.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 545.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 528.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 522.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 520.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 514.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 514.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 512.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 512.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 511.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 506.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 506.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 504.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 504.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 501.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 499.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 498.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 490.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 487.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 484.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 470.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 449.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 448.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 448.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 445.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 435.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 432.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 424.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 421.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 409.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 400.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 304.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.2
FF:10151-102I7 76 years, female 197.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.4
Pig sample Sample description nTPM
Amygdala
nTPM: 310.4
Samples: 4

Max nTPM: 434.2
Min nTPM: 226.4
Sample A Female 434.2
Sample B Female 294.1
Sample C Male 286.8
Sample D Male 226.4

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