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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:580.9 nTPM
HPA Brain:238.9 nTPM
GTEx:580.9 nTPM
FANTOM5:222.2 Scaled Tags Per Million
Pig:385.3 nTPM

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046859Antibody HPA063034
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.9
Sample id Sample description nTPM
Hippocampus
nTPM: 238.9
2529 Female, age 94, left hemisphere 299.2
1898 Male, age 80, left hemisphere 282.4
1855 Male, age 76, left hemisphere 233.1
2621 Female, age 67, right hemisphere 229.7
2148 Female, age 91, left hemisphere 202.2
1911 Female, age 85, right hemisphere 186.9
Dentate gyrus
nTPM: 217.4
2530 Female, age 94, left hemisphere 263.1
2010 Male, age 76, both hemispheres 253.4
2528 Male, age 74, both hemispheres 209.7
2531 Female, age 67, both hemispheres 203.5
2246 Female, age 85, both hemispheres 203.0
1927 Female, age 91, both hemispheres 171.9
Entorhinal gyrus
nTPM: 218.0
2117 Female, age 91, right hemisphere 244.8
2686 Male, age 75, right hemisphere 237.8
2764 Male, age 80, right hemisphere 225.6
1787 Male, age 76, left hemisphere 222.9
1938 Female, age 85, left hemisphere 217.3
2613 Female, age 94, left hemisphere 159.7
Hippocampus, CA1
nTPM: 206.4
2527 Male, age 74, both hemispheres 225.7
2749 Male, age 80, left hemisphere 220.2
1873 Female, age 85, both hemispheres 208.5
2045 Male, age 76, both hemispheres 196.4
2082 Female, age 91, right hemisphere 181.1
Hippocampus, CA2
nTPM: 223.2
1963 Male, age 80, left hemisphere 245.4
2437 Female, age 94, left hemisphere 240.0
1892 Male, age 76, both hemispheres 233.3
2249 Male, age 74, both hemispheres 218.8
1940 Female, age 85, left hemisphere 218.3
2113 Female, age 91, right hemisphere 183.2
Hippocampus, CA3
nTPM: 211.4
2436 Male, age 74, both hemispheres 257.9
1867 Male, age 76, both hemispheres 250.0
1891 Female, age 85, both hemispheres 207.4
2861 Female, age 67, both hemispheres 202.5
2137 Male, age 80, left hemisphere 199.6
2620 Female, age 94, left hemisphere 151.1
Parahippocampal cortex
nTPM: 209.7
2018 Male, age 76, both hemispheres 254.3
2245 Female, age 91, both hemispheres 244.7
1850 Male, age 80, both hemispheres 237.4
1933 Female, age 85, both hemispheres 217.4
1990 Female, age 91, right hemisphere 211.7
2250 Female, age 67, right hemisphere 207.8
2532 Female, age 72, left hemisphere 204.7
2692 Male, age 74, both hemispheres 202.8
2622 Female, age 67, right hemisphere 170.2
2693 Female, age 94, both hemispheres 146.2
Perirhinal gyrus
nTPM: 208.2
1847 Female, age 91, left hemisphere 236.9
2521 Female, age 94, right hemisphere 214.9
1794 Male, age 80, right hemisphere 211.8
1841 Female, age 85, right hemisphere 189.9
2848 Male, age 76, right hemisphere 187.6
Subiculum
nTPM: 219.3
2042 Male, age 76, both hemispheres 256.5
1901 Male, age 80, both hemispheres 233.5
1977 Female, age 85, both hemispheres 223.0
2619 Male, age 74, both hemispheres 216.6
2438 Female, age 94, left hemisphere 202.2
2729 Female, age 91, right hemisphere 184.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

580.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 580.9
Samples: 197

Max nTPM: 1509.7
Min nTPM: 337.9
Std nTPM: 153.0
Median nTPM: 558.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1509.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 1293.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1081.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 964.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 960.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 954.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 933.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 877.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 867.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 858.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 853.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 841.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 813.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 810.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 808.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 785.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 758.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 754.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 746.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 744.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 732.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 723.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 718.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 704.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 702.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 701.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 700.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 700.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 697.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 695.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 694.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 690.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 688.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 687.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 687.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 687.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 679.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 675.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 672.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 667.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 661.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 660.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 660.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 657.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 648.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 638.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 635.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 634.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 633.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 632.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 631.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 629.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 628.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 628.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 628.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 625.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 621.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 617.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 616.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 616.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 615.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 615.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 614.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 614.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 613.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 610.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 605.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 603.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 602.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 599.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 599.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 598.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 596.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 594.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 593.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 591.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 590.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 589.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 589.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 587.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 583.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 580.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 578.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 576.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 574.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 574.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 573.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 570.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 570.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 569.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 569.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 568.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 567.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 566.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 565.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 563.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 560.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 560.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 558.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 558.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 557.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 557.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 556.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 556.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 556.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 556.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 554.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 552.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 552.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 552.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 546.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 545.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 544.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 541.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 540.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 539.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 539.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 539.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 539.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 538.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 532.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 532.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 530.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 530.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 529.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 528.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 528.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 526.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 523.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 521.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 520.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 515.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 513.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 509.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 505.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 502.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 501.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 500.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 497.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 497.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 497.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 492.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 492.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 490.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 487.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 482.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 482.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 481.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 481.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 479.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 478.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 477.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 476.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 471.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 470.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 468.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 465.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 465.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 464.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 463.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 463.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 460.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 459.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 456.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 450.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 450.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 448.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 446.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 440.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 439.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 439.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 439.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 437.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 434.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 430.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 429.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 425.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 423.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 417.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 410.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 407.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 406.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 406.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 405.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 400.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 398.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 396.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 395.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 390.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 390.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 379.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 374.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 373.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 361.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 348.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 342.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 337.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 222.2
FF:10169-103B7 60 years, female 237.8
FF:10153-102I9 76 years, female 206.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.3
Pig sample Sample description nTPM
Subiculum
nTPM: 352.6
Samples: 4

Max nTPM: 481.8
Min nTPM: 305.2
Sample A Female 481.8
Sample B Female 305.7
Sample C Male 305.2
Sample D Male 317.6
Dorsal hippocampus
nTPM: 379.3
Samples: 4

Max nTPM: 511.1
Min nTPM: 261.0
Sample A Female 511.1
Sample B Female 351.8
Sample C Male 393.3
Sample D Male 261.0
Entorhinal cortex
nTPM: 385.3
Samples: 4

Max nTPM: 472.5
Min nTPM: 277.6
Sample A Female 416.2
Sample B Female 472.5
Sample C Male 374.8
Sample D Male 277.6
Ventral hippocampus
nTPM: 348.0
Samples: 4

Max nTPM: 422.0
Min nTPM: 260.2
Sample A Female 388.0
Sample B Female 260.2
Sample C Male 422.0
Sample D Male 321.8

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