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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:380.4 nTPM
FANTOM5:361.7 Scaled Tags Per Million
Pig:555.1 nTPM

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

380.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 302.2
2090 Male, age 80, both hemispheres 346.7
2188 Female, age 91, both hemispheres 343.2
2301 Female, age 85, both hemispheres 266.1
1984 Male, age 76, both hemispheres 252.8
Dorsal cochlear nucleus
nTPM: 319.2
2802 Male, age 74, right hemisphere 367.8
2187 Female, age 91, both hemispheres 338.5
2378 Male, age 80, both hemispheres 321.4
2370 Male, age 61, both hemispheres 317.2
2058 Male, age 76, both hemispheres 251.1
Dorsal tegmental nucleus
nTPM: 363.5
2358 Male, age 61, both hemispheres 542.2
2083 Male, age 80, both hemispheres 361.3
2326 Male, age 74, both hemispheres 292.3
1936 Male, age 76, left hemisphere 258.3
Dorsolateral tegmental area
nTPM: 344.2
2337 Male, age 61, both hemispheres 531.9
2751 Female, age 85, both hemispheres 333.4
2654 Male, age 80, both hemispheres 331.6
2141 Male, age 76, both hemispheres 273.5
2360 Male, age 74, both hemispheres 250.6
Kolliker-Fuse nucleus
nTPM: 350.9
2315 Male, age 76, right hemisphere 357.3
2793 Female, age 91, left hemisphere 349.9
2163 Male, age 80, both hemispheres 345.4
Lateral lemniscal nuclei
nTPM: 271.8
2169 Male, age 76, both hemispheres 334.5
2453 Male, age 74, right hemisphere 306.2
2746 Female, age 85, left hemisphere 295.5
2320 Female, age 91, left hemisphere 228.9
2036 Male, age 80, both hemispheres 193.8
Lateral parabrachial nucleus
nTPM: 343.7
2139 Female, age 85, right hemisphere 389.4
2792 Male, age 76, both hemispheres 359.9
2790 Male, age 61, both hemispheres 319.1
2013 Male, age 80, both hemispheres 306.4
Lateral vestibular nucleus
nTPM: 323.4
2311 Male, age 80, both hemispheres 327.8
2184 Male, age 76, both hemispheres 319.0
Locus coeruleus
nTPM: 314.6
2123 Female, age 91, both hemispheres 371.5
2014 Male, age 55, unknown 341.7
2788 Male, age 74, unknown 337.9
2720 Male, age 74, both hemispheres 309.6
2162 Male, age 80, both hemispheres 284.7
2317 Female, age 72, unknown 284.0
1980 Male, age 76, both hemispheres 273.1
Medial parabrachial nucleus
nTPM: 321.9
2170 Female, age 91, both hemispheres 372.0
2854 Male, age 80, both hemispheres 359.0
2156 Male, age 61, both hemispheres 304.5
2463 Female, age 85, right hemisphere 287.7
2786 Male, age 76, both hemispheres 286.1
Medial periolivary nuclei
nTPM: 306.2
2171 Female, age 85, both hemispheres 347.1
2063 Male, age 76, both hemispheres 337.1
2791 Male, age 74, right hemisphere 297.0
2458 Female, age 91, both hemispheres 281.2
2081 Male, age 80, both hemispheres 268.7
Motor facial nucleus
nTPM: 310.5
2697 Female, age 85, both hemispheres 370.2
2365 Male, age 74, right hemisphere 336.8
2062 Male, age 76, both hemispheres 316.6
2795 Female, age 91, both hemispheres 300.2
2126 Male, age 61, both hemispheres 289.2
2327 Male, age 80, both hemispheres 250.0
Motor trigeminal nucleus
nTPM: 295.0
2335 Male, age 61, both hemispheres 345.0
2079 Male, age 80, both hemispheres 297.7
2560 Male, age 74, both hemispheres 293.1
2321 Female, age 91, both hemispheres 270.6
2309 Male, age 76, both hemispheres 268.6
Nuclei of the trapezoid body
nTPM: 286.7
1983 Male, age 76, both hemispheres 354.1
2735 Female, age 85, both hemispheres 305.9
2159 Male, age 61, both hemispheres 280.8
2166 Male, age 80, both hemispheres 270.0
2368 Female, age 91, both hemispheres 222.6
Nucleus raphe magnus
nTPM: 307.4
2172 Female, age 85, both hemispheres 379.5
2160 Male, age 61, both hemispheres 320.4
2051 Male, age 76, both hemispheres 320.1
2455 Male, age 74, both hemispheres 313.7
2328 Male, age 80, both hemispheres 275.8
2459 Female, age 91, both hemispheres 235.1
Paramedian reticular nucleus
nTPM: 315.4
2050 Female, age 85, both hemispheres 378.4
2052 Male, age 76, both hemispheres 315.1
2057 Male, age 80, both hemispheres 297.2
2313 Male, age 61, both hemispheres 271.1
Pedunculopontine tegmental nucleus
nTPM: 380.4
2338 Male, age 61, both hemispheres 514.3
2334 Male, age 80, both hemispheres 332.9
1921 Female, age 85, both hemispheres 294.1
Pontine nuclei
nTPM: 314.1
2787 Female, age 85, both hemispheres 457.0
1863 Male, age 55, unknown 385.4
2109 Female, age 72, unknown 304.8
2115 Male, age 80, left hemisphere 280.1
1968 Male, age 76, left hemisphere 278.7
2319 Female, age 91, both hemispheres 277.3
2454 Male, age 74, left hemisphere 276.8
2727 Male, age 61, right hemisphere 252.9
Pontine raphe nucleus
nTPM: 313.9
2122 Female, age 85, midline 328.9
2853 Male, age 76, midline 298.8
Posteroventral cochlear nucleus
nTPM: 330.4
2341 Male, age 80, both hemispheres 395.6
2135 Female, age 91, both hemispheres 338.3
2371 Male, age 61, both hemispheres 313.9
2070 Male, age 76, both hemispheres 305.1
2752 Female, age 85, both hemispheres 299.0
Principal sensory trigeminal nucleus
nTPM: 279.2
2367 Female, age 91, left hemisphere 291.9
2324 Male, age 76, both hemispheres 291.1
2158 Male, age 61, both hemispheres 287.1
2008 Male, age 80, left hemisphere 246.6
Reticular pontine nucleus, caudal
nTPM: 298.4
2092 Male, age 76, both hemispheres 357.8
2559 Male, age 74, both hemispheres 311.1
2457 Female, age 91, both hemispheres 284.1
2332 Male, age 80, right hemisphere 240.5
Reticular pontine nucleus, oral
nTPM: 322.8
1939 Male, age 80, both hemispheres 360.0
2167 Male, age 76, both hemispheres 319.3
2012 Female, age 85, both hemispheres 315.2
2366 Female, age 91, both hemispheres 314.8
2361 Male, age 74, both hemispheres 304.7
Reticulotegmental nucleus
nTPM: 310.6
2452 Male, age 74, both hemispheres 320.9
2322 Female, age 91, both hemispheres 310.0
2333 Male, age 80, both hemispheres 308.6
2325 Male, age 76, both hemispheres 302.8
Spinal trigeminal nucleus, oral
nTPM: 295.2
2164 Male, age 80, both hemispheres 366.8
2737 Female, age 85, both hemispheres 289.1
1978 Male, age 76, both hemispheres 229.7
Subcoeruleus area
nTPM: 299.4
1958 Male, age 80, both hemispheres 323.7
2323 Female, age 91, left hemisphere 310.6
2451 Male, age 74, both hemispheres 299.5
2369 Female, age 85, left hemisphere 297.6
2089 Male, age 76, left hemisphere 265.8
Superior olive
nTPM: 298.5
1875 Female, age 85, both hemispheres 343.1
2020 Male, age 76, both hemispheres 312.3
2364 Male, age 74, right hemisphere 306.0
2561 Female, age 91, both hemispheres 270.8
2329 Male, age 80, right hemisphere 260.3
Ventral periolivary nuclei
nTPM: 315.1
2165 Male, age 80, both hemispheres 333.1
2130 Female, age 85, both hemispheres 323.3
2023 Male, age 76, both hemispheres 318.6
2794 Female, age 91, left hemisphere 285.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 329.1
2359 Male, age 61, both hemispheres 433.5
2840 Female, age 85, both hemispheres 366.4
1959 Male, age 76, both hemispheres 321.4
2161 Male, age 80, both hemispheres 314.1
2449 Male, age 74, both hemispheres 297.2
2456 Female, age 91, both hemispheres 241.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

361.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 361.7
FF:10182-103D2 60 years, female 432.9
FF:10165-103B3 76 years, female 290.4
Pons
Scaled Tags Per Million: 159.1
FF:10033-101E6 18-54 years, mixed 159.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

555.1
Pig sample Sample description nTPM
Pons
nTPM: 555.1
Samples: 4

Max nTPM: 694.8
Min nTPM: 398.6
Sample A Female 694.8
Sample B Female 398.6
Sample C Male 517.6
Sample D Male 609.5

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