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  • HSP90AB1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:500.3 nTPM
HPA Brain:608.8 nTPM
GTEx:500.3 nTPM
FANTOM5:1427.2 Scaled Tags Per Million
Pig:511.8 nTPM
Mouse:1237.1 nTPM
Allen mouse:31.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

608.8
Sample id Sample description nTPM
Amygdala
nTPM: 608.8
2814 Male, age 76, right hemisphere 663.1
2695 Female, age 67, right hemisphere 630.1
1987 Female, age 91, left hemisphere 619.8
2514 Male, age 75, right hemisphere 586.8
2517 Female, age 94, left hemisphere 544.1
Basal amygdala
nTPM: 508.9
2243 Female, age 91, right hemisphere 561.7
2110 Male, age 80, left hemisphere 554.1
2609 Male, age 75, right hemisphere 524.4
1955 Male, age 76, both hemispheres 511.8
2827 Female, age 67, right hemisphere 451.7
2685 Female, age 94, left hemisphere 449.9
Central amygdala
nTPM: 561.1
2826 Female, age 94, left hemisphere 608.6
1905 Male, age 76, both hemispheres 598.7
2515 Male, age 75, right hemisphere 554.2
2239 Male, age 80, left hemisphere 549.4
2701 Female, age 91, right hemisphere 494.8
Corticomedial amygdala
nTPM: 523.8
2829 Male, age 80, left hemisphere 653.3
2428 Male, age 75, right hemisphere 533.9
2242 Female, age 91, right hemisphere 532.5
2240 Male, age 76, both hemispheres 515.9
2429 Female, age 94, left hemisphere 464.4
2535 Female, age 67, right hemisphere 442.6
Lateral amygdala
nTPM: 520.4
1883 Male, age 76, both hemispheres 626.2
2534 Female, age 94, left hemisphere 559.3
2516 Male, age 75, right hemisphere 557.6
2830 Female, age 67, right hemisphere 522.6
2256 Male, age 80, left hemisphere 446.0
2255 Female, age 91, right hemisphere 410.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

500.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 500.3
Samples: 152

Max nTPM: 1974.5
Min nTPM: 237.4
Std nTPM: 216.8
Median nTPM: 463.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1974.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1438.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1120.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1084.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1001.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 960.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 959.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 932.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 924.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 769.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 765.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 763.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 734.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 728.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 703.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 694.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 683.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 676.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 649.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 636.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 631.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 628.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 626.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 622.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 620.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 616.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 615.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 615.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 612.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 606.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 603.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 602.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 600.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 599.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 577.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 571.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 561.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 557.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 551.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 550.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 546.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 539.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 537.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 537.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 531.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 526.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 525.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 524.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 523.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 521.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 519.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 519.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 515.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 514.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 513.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 513.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 502.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 501.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 496.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 496.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 493.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 491.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 484.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 484.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 484.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 481.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 479.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 478.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 478.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 473.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 471.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 471.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 469.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 468.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 465.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 463.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 463.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 457.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 456.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 453.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 453.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 448.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 446.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 446.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 445.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 444.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 440.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 436.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 436.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 430.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 423.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 421.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 417.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 413.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 407.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 407.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 404.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 402.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 400.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 398.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 397.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 396.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 391.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 390.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 386.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 382.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 379.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 374.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 367.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 365.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 364.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 362.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 361.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 360.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 357.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 357.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 356.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 353.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 350.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 348.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 347.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 347.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 347.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 346.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 343.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 343.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 342.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 339.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 338.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 336.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 335.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 331.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 329.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 326.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 319.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 318.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 315.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 314.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 314.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 313.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 307.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 306.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 306.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 306.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 305.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 299.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 278.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 276.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 271.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 271.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 246.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 237.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1427.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1427.2
FF:10151-102I7 76 years, female 1427.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.8
Pig sample Sample description nTPM
Amygdala
nTPM: 511.9
Samples: 4

Max nTPM: 704.0
Min nTPM: 427.7
Sample A Female 704.0
Sample B Female 428.3
Sample C Male 487.4
Sample D Male 427.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1237.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1237.1
Samples: 4

Max nTPM: 1320.0
Min nTPM: 1155.0
Sample A Male 1320.0
Sample B Male 1228.0
Sample C Female 1155.0
Sample D Female 1245.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.8
69735168 Antisense, RP_050503_02_C01, Mouse strain C57BL/6J (56 days, male) 31.8

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