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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:329.1 nTPM
GTEx:329.1 nTPM
FANTOM5:921.4 Scaled Tags Per Million
Pig:199.8 nTPM
Mouse:709.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

329.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 329.1
Samples: 105

Max nTPM: 782.6
Min nTPM: 230.4
Std nTPM: 83.9
Median nTPM:
99_1 64 years, male 782.6
317_1 60 years, male 596.6
379_1 60 years, male 574.6
491_1 89 years, female 527.0
120_1 70 years, female 498.8
109_1 81 years, female 485.4
173_1 67 years, male 477.4
347_1 72 years, male 476.1
41_1 94 years, female 467.3
452_1 88 years, female 457.8
42_1 85 years, male 444.2
119_1 70 years, female 440.0
447_1 81 years, male 437.9
315_1 62 years, female 383.4
386_1 76 years, male 383.3
355_1 70 years, female 379.9
349_1 83 years, male 371.0
266_1 85 years, male 370.5
117_1 61 years, male 369.2
115_1 83 years, male 367.3
307_1 66 years, female 367.3
177_1 74 years, male 366.8
43_1 64 years, female 358.2
413_1 59 years, female 353.1
229_1 69 years, female 351.1
404_1 82 years, female 347.9
506_1 65 years, male 346.8
384_1 83 years, male 346.0
243_1 75 years, male 344.1
265_1 87 years, male 343.9
324_1 76 years, male 342.0
308_1 70 years, female 335.4
375_1 74 years, female 333.8
396_1 62 years, male 333.2
490_1 67 years, female 332.1
351_1 91 years, male 331.4
172_1 72 years, female 329.2
145_1 84 years, male 328.1
218_1 71 years, female 326.9
139_1 64 years, female 326.4
311_1 78 years, male 323.2
142_1 61 years, female 323.1
501_1 88 years, male 322.3
348_1 84 years, male 320.4
6_1 73 years, female 319.9
376_1 75 years, female 317.4
17_1 71 years, male 316.8
246_1 77 years, male 316.0
162_1 79 years, female 315.3
314_1 67 years, male 311.7
377_1 82 years, female 309.2
89_1 63 years, male 307.1
2_1 77 years, female 307.0
352_1 62 years, male 305.1
495_1 57 years, female 303.8
313_1 79 years, female 302.9
350_1 84 years, female 301.2
353_1 82 years, female 300.8
316_1 62 years, male 300.7
189_1 76 years, male 300.3
321_1 62 years, female 297.2
414_1 84 years, female 296.9
32_1 67 years, male 296.3
322_1 76 years, male 295.0
254_1 77 years, female 294.0
18_1 88 years, male 293.1
356_1 87 years, female 291.1
526_1 61 years, male 289.1
126_1 63 years, male 288.9
137_1 83 years, male 288.0
35_1 74 years, female 287.9
153_1 70 years, female 287.9
291_1 76 years, male 284.9
288_1 66 years, female 284.7
237_1 82 years, male 284.1
295_1 61 years, female 279.8
518_1 75 years, female 279.1
4_1 88 years, female 277.8
318_1 68 years, male 274.9
335_1 73 years, female 273.9
9_1 66 years, female 272.6
81_1 67 years, male 270.7
292_1 71 years, male 269.7
286_1 68 years, female 269.4
319_1 81 years, male 269.4
468_1 89 years, male 268.9
149_1 88 years, male 268.5
425_1 59 years, female 265.9
354_1 81 years, female 264.9
480_1 63 years, male 263.5
499_1 55 years, female 262.1
394_1 75 years, female 262.0
415_1 77 years, female 260.6
264_1 73 years, female 260.3
163_1 78 years, male 255.4
405_1 91 years, male 254.4
466_1 57 years, female 252.7
503_1 68 years, male 251.0
293_1 68 years, female 250.7
406_1 79 years, male 248.6
517_1 88 years, male 247.4
217_1 76 years, male 244.8
251_1 78 years, male 244.7
320_1 89 years, female 244.0
389_1 86 years, female 230.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

921.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 921.4
FF:10030-101E3 24-65 years, mixed 921.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.8
Pig sample Sample description nTPM
Retina
nTPM: 199.8
Samples: 4

Max nTPM: 240.5
Min nTPM: 178.1
Sample A Female 178.1
Sample B Female 240.5
Sample C Male 201.3
Sample D Male 179.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

709.5
Mouse sample Sample description nTPM
Retina
nTPM: 709.5
Samples: 4

Max nTPM: 887.0
Min nTPM: 610.0
Sample A Male 685.4
Sample B Male 655.7
Sample C Female 610.0
Sample D Female 887.0

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