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HSP90AB1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:441.4 nTPM
FANTOM5:1478.5 Scaled Tags Per Million
Pig:434.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA072606Antibody HPA074351Antibody CAB005230
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

441.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 441.4
Samples: 246

Max nTPM: 1485.2
Min nTPM: 232.0
Std nTPM: 175.7
Median nTPM: 406.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1485.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1372.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1330.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1208.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1000.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 965.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 963.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 892.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 865.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 862.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 829.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 767.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 710.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 667.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 661.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 660.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 654.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 653.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 641.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 638.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 633.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 622.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 619.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 601.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 590.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 589.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 586.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 585.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 583.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 581.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 579.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 572.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 559.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 557.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 552.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 551.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 543.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 541.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 538.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 533.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 532.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 530.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 524.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 522.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 519.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 517.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 507.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 507.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 503.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 501.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 500.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 497.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 497.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 497.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 497.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 495.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 493.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 492.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 492.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 491.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 490.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 488.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 488.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 486.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 482.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 479.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 479.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 476.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 475.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 473.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 472.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 472.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 472.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 471.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 470.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 467.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 467.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 466.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 464.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 461.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 459.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 459.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 457.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 456.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 455.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 452.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 451.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 448.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 448.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 446.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 443.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 443.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 440.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 440.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 436.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 436.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 436.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 433.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 431.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 427.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 427.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 427.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 426.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 424.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 421.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 421.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 421.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 420.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 420.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 419.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 418.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 417.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 415.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 414.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 413.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 412.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 412.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 411.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 411.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 410.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 410.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 407.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 406.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 405.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 405.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 403.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 403.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 402.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 402.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 401.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 400.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 398.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 396.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 395.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 393.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 393.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 392.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 392.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 390.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 388.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 383.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 382.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 382.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 382.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 380.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 380.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 379.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 378.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 378.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 377.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 376.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 376.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 375.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 375.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 374.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 373.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 372.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 371.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 370.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 369.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 368.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 368.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 367.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 367.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 366.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 364.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 362.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 360.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 359.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 359.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 357.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 354.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 353.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 353.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 349.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 348.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 348.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 346.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 345.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 344.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 344.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 343.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 343.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 338.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 338.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 336.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 335.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 333.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 332.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 329.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 328.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 327.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 325.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 325.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 324.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 323.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 321.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 321.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 320.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 320.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 319.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 318.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 318.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 317.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 315.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 314.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 313.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 312.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 312.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 310.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 310.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 307.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 305.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 302.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 302.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 300.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 300.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 300.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 299.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 298.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 298.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 296.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 290.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 289.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 284.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 277.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 271.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 267.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 267.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 264.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 263.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 263.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 260.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 260.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 259.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 257.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 256.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 252.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 251.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 251.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 251.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 250.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 249.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 241.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 241.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 232.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1478.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1478.5
FF:10164-103B2 76 years, female 1478.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.2
Pig sample Sample description nTPM
Caudate
nTPM: 434.2
Samples: 4

Max nTPM: 495.6
Min nTPM: 390.0
Sample A Female 413.7
Sample B Female 437.4
Sample C Male 495.6
Sample D Male 390.0

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